Analysis of interatomic Contacts of Structural Units in PDB entry:
3DKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DKG entry

There is 1 chain in PDB entry 3DKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1050TYR 1356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3DKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1054 1058Right-handed 310
Helix 2
2
A
1059 1066Right-handed alpha
Helix 3
3
A
1117 1133Right-handed alpha
Helix 4
4
A
1164 1171Right-handed alpha
Helix 5
5
A
1177 1198Right-handed alpha
Helix 6
6
A
1206 1208Right-handed 310
Helix 7
7
A
1223 1227Right-handed 310
Helix 8
8
A
1246 1250Right-handed 310
Helix 9
9
A
1251 1258Right-handed alpha
Helix 10
10
A
1261 1278Right-handed alpha
Helix 11
11
A
1288 1290Right-handed 310
Helix 12
12
A
1291 1298Right-handed alpha
Helix 13
13
A
1309 1320Right-handed alpha
Helix 14
14
A
1323 1327Right-handed 310
Helix 15
15
A
1329 1343Right-handed alpha
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There are 2 sheets in PDB entry 3DKG. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1076 1083first strand
Strand 2
A
1092 1097anti-parallel
Strand 3
A
1105 1111anti-parallel
Strand 4
A
1152 1158anti-parallel
Strand 5
A
1144 1148anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1210 1212first strand
Strand 2
A
1218 1220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il