Analysis of interatomic Contacts of Structural Units in PDB entry:
3DKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DKP entry

There is 1 chain in PDB entry 3DKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 137ALA 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3DKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
137 147Right-handed alpha
Helix 2
2
A
162 171Right-handed alpha
Helix 3
3
A
173 183Right-handed alpha
Helix 4
4
A
189 201Right-handed alpha
Helix 5
5
A
214 228Right-handed alpha
Helix 6
6
A
243 258Right-handed alpha
Helix 7
7
A
269 276Right-handed alpha
Helix 8
8
A
292 302Right-handed alpha
Helix 9
9
A
319 327Right-handed alpha
Helix 10
10
A
330 342Right-handed alpha
Helix 11
11
A
357 368Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3DKP.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
205 208parallel
Strand 4
A
348 353parallel
Strand 5
A
314 317parallel
Strand 6
A
237 240parallel
Strand 7
A
288 291parallel
Strand 8
A
265 266parallel
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