Analysis of interatomic Contacts of Structural Units in PDB entry:
3DKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DKR entry

There is 1 chain in PDB entry 3DKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3GLU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3DKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 30Right-handed 310
Helix 2
2
A
31 41Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
66 83Right-handed alpha
Helix 5
5
A
93 107Right-handed alpha
Helix 6
6
A
126 143Right-handed alpha
Helix 7
7
A
147 172Right-handed alpha
Helix 8
8
A
173 176Right-handed 310
Helix 9
9
A
194 203Right-handed alpha
Helix 10
10
A
226 240Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3DKR.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
16 21parallel
Strand 4
A
87 92parallel
Strand 5
A
112 115parallel
Strand 6
A
180 185parallel
Strand 7
A
209 214parallel
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