Analysis of interatomic Contacts of Structural Units in PDB entry:
3DL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DL3 entry

There are 8 chains in PDB entry 3DL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5GLN 100
B
 LEU 4ASP 99
D
 LEU 4ASP 99
E
 SER 2LYS 111
G
 ILE 6ASP 99
H
 ARG 5ASP 99
F
 SER 2LYS 111
I
 HIS 3MSE 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3DL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 30Right-handed alpha
Helix 2
2
B
25 30Right-handed alpha
Helix 3
3
D
25 30Right-handed alpha
Helix 4
4
G
25 29Right-handed 310
Helix 5
5
F
25 30Right-handed alpha
Helix 6
6
I
25 30Right-handed alpha
Helix 7
7
I
101 107Right-handed alpha
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There are 16 sheets in PDB entry 3DL3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
91 98anti-parallel
Strand 3
A
38 46anti-parallel
Strand 4
A
72 76anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
81 86anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
91 98anti-parallel
Strand 3
B
39 46anti-parallel
Strand 4
B
72 76anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
81 86anti-parallel
Strand 3
B
48 53anti-parallel
Strand 4
B
64 69anti-parallel
Strand 5
D
64 69anti-parallel
Strand 6
D
48 54anti-parallel
Strand 7
D
81 86anti-parallel
Strand 8
D
32 33anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
91 98anti-parallel
Strand 3
D
39 46anti-parallel
Strand 4
D
72 76anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 15first strand
Strand 2
E
91 98anti-parallel
Strand 3
E
38 46anti-parallel
Strand 4
E
73 76anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
108 109anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 69first strand
Strand 2
E
48 53anti-parallel
Strand 3
E
82 86anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 15first strand
Strand 2
G
91 98anti-parallel
Strand 3
G
38 46anti-parallel
Strand 4
G
72 76anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
82 86first strand
Strand 2
G
48 53anti-parallel
Strand 3
G
64 69anti-parallel
Strand 4
H
64 69anti-parallel
Strand 5
H
48 54anti-parallel
Strand 6
H
81 86anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 15first strand
Strand 2
H
91 98anti-parallel
Strand 3
H
39 46anti-parallel
Strand 4
H
72 76anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 15first strand
Strand 2
F
91 98anti-parallel
Strand 3
F
38 46anti-parallel
Strand 4
F
73 76anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 34first strand
Strand 2
F
108 110anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
82 86first strand
Strand 2
F
48 53anti-parallel
Strand 3
F
64 69anti-parallel
Strand 4
I
64 68anti-parallel
Strand 5
I
49 53anti-parallel
Strand 6
I
82 86anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 15first strand
Strand 2
I
91 98anti-parallel
Strand 3
I
19 20anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 15first strand
Strand 2
I
91 98anti-parallel
Strand 3
I
39 46anti-parallel
Strand 4
I
73 76anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il