Analysis of interatomic Contacts of Structural Units in PDB entry:
3DL6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DL6 entry

There are 5 chains in PDB entry 3DL6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3VAL 521
B
 GLU 3VAL 521
C
 GLU 3VAL 521
D
 GLU 3VAL 521
E
 GLU 3VAL 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 3DL6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
56 62Right-handed alpha
Helix 3
3
A
93 98Right-handed alpha
Helix 4
4
A
115 125Right-handed alpha
Helix 5
5
A
193 207Right-handed alpha
Helix 6
6
A
211 216Right-handed alpha
Helix 7
7
A
220 224Right-handed 310
Helix 8
8
A
237 251Right-handed alpha
Helix 9
9
A
287 301Right-handed alpha
Helix 10
10
A
304 310Right-handed alpha
Helix 11
11
A
317 320Right-handed 310
Helix 12
12
A
321 328Right-handed alpha
Helix 13
13
A
343 348Right-handed alpha
Helix 14
14
A
366 378Right-handed alpha
Helix 15
15
A
393 397Right-handed 310
Helix 16
16
A
430 450Right-handed alpha
Helix 17
17
A
469 477Right-handed alpha
Helix 18
18
A
495 499Right-handed 310
Helix 19
19
A
500 502Right-handed 310
Helix 20
20
B
29 41Right-handed alpha
Helix 21
21
B
56 63Right-handed alpha
Helix 22
22
B
115 125Right-handed alpha
Helix 23
23
B
193 207Right-handed alpha
Helix 24
24
B
211 216Right-handed alpha
Helix 25
25
B
220 224Right-handed 310
Helix 26
26
B
237 251Right-handed alpha
Helix 27
27
B
287 301Right-handed alpha
Helix 28
28
B
305 310Right-handed alpha
Helix 29
29
B
317 320Right-handed 310
Helix 30
30
B
321 329Right-handed alpha
Helix 31
31
B
343 349Right-handed alpha
Helix 32
32
B
366 378Right-handed alpha
Helix 33
33
B
393 397Right-handed 310
Helix 34
34
B
430 450Right-handed alpha
Helix 35
35
B
469 477Right-handed alpha
Helix 36
36
B
495 499Right-handed 310
Helix 37
37
B
500 502Right-handed 310
Helix 38
38
C
29 42Right-handed alpha
Helix 39
39
C
56 63Right-handed alpha
Helix 40
40
C
93 98Right-handed alpha
Helix 41
41
C
115 125Right-handed alpha
Helix 42
42
C
193 207Right-handed alpha
Helix 43
43
C
211 216Right-handed alpha
Helix 44
44
C
220 224Right-handed 310
Helix 45
45
C
237 251Right-handed alpha
Helix 46
46
C
287 301Right-handed alpha
Helix 47
47
C
305 310Right-handed alpha
Helix 48
48
C
317 320Right-handed 310
Helix 49
49
C
321 328Right-handed alpha
Helix 50
50
C
343 348Right-handed alpha
Helix 51
51
C
366 378Right-handed alpha
Helix 52
52
C
393 397Right-handed 310
Helix 53
53
C
429 450Right-handed alpha
Helix 54
54
C
469 477Right-handed alpha
Helix 55
55
C
495 499Right-handed 310
Helix 56
56
C
500 502Right-handed 310
Helix 57
57
D
29 40Right-handed alpha
Helix 58
58
D
56 62Right-handed alpha
Helix 59
59
D
93 99Right-handed alpha
Helix 60
60
D
100 103Right-handed 310
Helix 61
61
D
115 125Right-handed alpha
Helix 62
62
D
193 207Right-handed alpha
Helix 63
63
D
211 216Right-handed alpha
Helix 64
64
D
220 224Right-handed 310
Helix 65
65
D
237 251Right-handed alpha
Helix 66
66
D
287 301Right-handed alpha
Helix 67
67
D
305 310Right-handed alpha
Helix 68
68
D
317 320Right-handed 310
Helix 69
69
D
321 328Right-handed alpha
Helix 70
70
D
343 348Right-handed alpha
Helix 71
71
D
366 378Right-handed alpha
Helix 72
72
D
393 397Right-handed 310
Helix 73
73
D
429 450Right-handed alpha
Helix 74
74
D
469 478Right-handed alpha
Helix 75
75
D
495 499Right-handed 310
Helix 76
76
D
500 502Right-handed 310
Helix 77
77
E
29 42Right-handed alpha
Helix 78
78
E
56 63Right-handed alpha
Helix 79
79
E
93 98Right-handed alpha
Helix 80
80
E
99 101Right-handed 310
Helix 81
81
E
115 125Right-handed alpha
Helix 82
82
E
193 207Right-handed alpha
Helix 83
83
E
211 216Right-handed alpha
Helix 84
84
E
220 224Right-handed 310
Helix 85
85
E
237 251Right-handed alpha
Helix 86
86
E
287 301Right-handed alpha
Helix 87
87
E
305 311Right-handed alpha
Helix 88
88
E
321 328Right-handed alpha
Helix 89
89
E
343 348Right-handed alpha
Helix 90
90
E
366 378Right-handed alpha
Helix 91
91
E
393 397Right-handed 310
Helix 92
92
E
429 450Right-handed alpha
Helix 93
93
E
469 477Right-handed alpha
Helix 94
94
E
495 499Right-handed 310
Helix 95
95
E
500 502Right-handed 310
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There are 26 sheets in PDB entry 3DL6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
71 75parallel
Strand 3
A
49 55parallel
Strand 4
A
107 114parallel
Strand 5
A
6 13parallel
Strand 6
A
130 136parallel
Strand 7
A
168 176anti-parallel
Strand 8
A
163 165anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
71 75parallel
Strand 3
A
49 55parallel
Strand 4
A
107 114parallel
Strand 5
A
6 13parallel
Strand 6
A
130 136parallel
Strand 7
A
168 176anti-parallel
Strand 8
A
155 159anti-parallel
Strand 9
A
232 233parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
145 146anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
262 273anti-parallel
Strand 3
A
452 464anti-parallel
Strand 4
A
415 426parallel
Strand 5
A
403 410anti-parallel
Strand 6
A
385 387anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 489first strand
Strand 2
A
504 507anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
71 75parallel
Strand 3
B
49 55parallel
Strand 4
B
107 114parallel
Strand 5
B
6 13parallel
Strand 6
B
130 136parallel
Strand 7
B
168 176anti-parallel
Strand 8
B
155 159anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
71 75parallel
Strand 3
B
49 55parallel
Strand 4
B
107 114parallel
Strand 5
B
6 13parallel
Strand 6
B
130 136parallel
Strand 7
B
168 176anti-parallel
Strand 8
B
163 165anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
145 146anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
262 273anti-parallel
Strand 3
B
452 466anti-parallel
Strand 4
B
415 426parallel
Strand 5
B
403 410anti-parallel
Strand 6
B
385 387anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
504 507anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 91first strand
Strand 2
C
71 75parallel
Strand 3
C
49 55parallel
Strand 4
C
107 112parallel
Strand 5
C
6 13parallel
Strand 6
C
130 136parallel
Strand 7
C
168 173anti-parallel
Strand 8
C
163 165anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
145 146anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 156first strand
Strand 2
C
175 177anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 159first strand
Strand 2
C
232 233parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 254first strand
Strand 2
C
262 273anti-parallel
Strand 3
C
452 466anti-parallel
Strand 4
C
415 426parallel
Strand 5
C
403 410anti-parallel
Strand 6
C
385 387anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
486 489first strand
Strand 2
C
504 507anti-parallel
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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 91first strand
Strand 2
D
71 75parallel
Strand 3
D
49 55parallel
Strand 4
D
107 114parallel
Strand 5
D
6 13parallel
Strand 6
D
130 136parallel
Strand 7
D
168 177anti-parallel
Strand 8
D
163 165anti-parallel
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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 91first strand
Strand 2
D
71 75parallel
Strand 3
D
49 55parallel
Strand 4
D
107 114parallel
Strand 5
D
6 13parallel
Strand 6
D
130 136parallel
Strand 7
D
168 177anti-parallel
Strand 8
D
154 159anti-parallel
Strand 9
D
232 233parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 20first strand
Strand 2
D
145 146anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 254first strand
Strand 2
D
262 273anti-parallel
Strand 3
D
452 466anti-parallel
Strand 4
D
415 426parallel
Strand 5
D
403 410anti-parallel
Strand 6
D
385 387anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
486 489first strand
Strand 2
D
504 507anti-parallel
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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 91first strand
Strand 2
E
71 75parallel
Strand 3
E
49 55parallel
Strand 4
E
107 114parallel
Strand 5
E
6 13parallel
Strand 6
E
130 136parallel
Strand 7
E
168 176anti-parallel
Strand 8
E
155 156anti-parallel
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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 91first strand
Strand 2
E
71 75parallel
Strand 3
E
49 55parallel
Strand 4
E
107 114parallel
Strand 5
E
6 13parallel
Strand 6
E
130 136parallel
Strand 7
E
168 176anti-parallel
Strand 8
E
163 165anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 20first strand
Strand 2
E
145 146anti-parallel
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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
262 273first strand
Strand 2
E
452 466anti-parallel
Strand 3
E
415 426parallel
Strand 4
E
403 410anti-parallel
Strand 5
E
385 387anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
487 489first strand
Strand 2
E
504 506anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il