Analysis of interatomic Contacts of Structural Units in PDB entry:
3DL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DL8 entry

There are 8 chains in PDB entry 3DL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6ALA 778
B
 ASN 6ALA 778
G
 LEU 8ARG 428
H
 LEU 8ARG 428
C
 LYS 28ARG 62
D
 LYS 28ARG 62
E
 LEU 8ILE 72
F
 LEU 8ILE 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 3DL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 34Right-handed alpha
Helix 2
2
A
38 52Right-handed alpha
Helix 3
3
A
58 77Right-handed alpha
Helix 4
4
A
85 95Right-handed alpha
Helix 5
5
A
106 119Right-handed alpha
Helix 6
6
A
130 141Right-handed alpha
Helix 7
7
A
141 148Right-handed alpha
Helix 8
8
A
163 170Right-handed alpha
Helix 9
9
A
177 187Right-handed alpha
Helix 10
10
A
229 247Right-handed alpha
Helix 11
11
A
262 272Right-handed alpha
Helix 12
12
A
283 300Right-handed alpha
Helix 13
13
A
332 342Right-handed alpha
Helix 14
14
A
375 384Right-handed alpha
Helix 15
15
A
412 429Right-handed alpha
Helix 16
16
A
438 453Right-handed alpha
Helix 17
17
A
463 474Right-handed alpha
Helix 18
18
A
498 502Right-handed 310
Helix 19
19
A
515 525Right-handed alpha
Helix 20
20
A
544 549Right-handed alpha
Helix 21
21
A
550 560Right-handed alpha
Helix 22
22
A
573 620Right-handed alpha
Helix 23
23
A
623 641Right-handed alpha
Helix 24
24
A
653 664Right-handed alpha
Helix 25
25
A
681 702Right-handed alpha
Helix 26
26
A
704 742Right-handed alpha
Helix 27
27
A
749 777Right-handed alpha
Helix 28
28
B
8 34Right-handed alpha
Helix 29
29
B
38 52Right-handed alpha
Helix 30
30
B
58 77Right-handed alpha
Helix 31
31
B
85 95Right-handed alpha
Helix 32
32
B
106 119Right-handed alpha
Helix 33
33
B
130 141Right-handed alpha
Helix 34
34
B
141 148Right-handed alpha
Helix 35
35
B
163 170Right-handed alpha
Helix 36
36
B
177 187Right-handed alpha
Helix 37
37
B
229 247Right-handed alpha
Helix 38
38
B
262 272Right-handed alpha
Helix 39
39
B
283 300Right-handed alpha
Helix 40
40
B
332 342Right-handed alpha
Helix 41
41
B
375 384Right-handed alpha
Helix 42
42
B
412 429Right-handed alpha
Helix 43
43
B
438 453Right-handed alpha
Helix 44
44
B
463 474Right-handed alpha
Helix 45
45
B
498 502Right-handed 310
Helix 46
46
B
515 525Right-handed alpha
Helix 47
47
B
544 549Right-handed alpha
Helix 48
48
B
550 560Right-handed alpha
Helix 49
49
B
573 620Right-handed alpha
Helix 50
50
B
623 641Right-handed alpha
Helix 51
51
B
653 664Right-handed alpha
Helix 52
52
B
681 702Right-handed alpha
Helix 53
53
B
704 742Right-handed alpha
Helix 54
54
B
749 777Right-handed alpha
Helix 55
55
G
15 34Right-handed alpha
Helix 56
56
G
76 94Right-handed alpha
Helix 57
57
G
105 138Right-handed alpha
Helix 58
58
G
153 180Right-handed alpha
Helix 59
59
G
183 197Right-handed alpha
Helix 60
60
G
215 233Right-handed alpha
Helix 61
61
G
273 291Right-handed alpha
Helix 62
62
G
307 328Right-handed alpha
Helix 63
63
G
331 339Right-handed alpha
Helix 64
64
G
352 386Right-handed alpha
Helix 65
65
G
397 418Right-handed alpha
Helix 66
66
H
15 34Right-handed alpha
Helix 67
67
H
76 94Right-handed alpha
Helix 68
68
H
105 138Right-handed alpha
Helix 69
69
H
153 180Right-handed alpha
Helix 70
70
H
183 197Right-handed alpha
Helix 71
71
H
215 233Right-handed alpha
Helix 72
72
H
273 291Right-handed alpha
Helix 73
73
H
307 328Right-handed alpha
Helix 74
74
H
331 339Right-handed alpha
Helix 75
75
H
352 386Right-handed alpha
Helix 76
76
H
397 418Right-handed alpha
Helix 77
77
C
28 62Right-handed alpha
Helix 78
78
D
28 62Right-handed alpha
Helix 79
79
E
8 32Right-handed alpha
Helix 80
80
E
52 71Right-handed alpha
Helix 81
81
F
8 32Right-handed alpha
Helix 82
82
F
52 71Right-handed alpha
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There are 4 sheets in PDB entry 3DL8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
367 370parallel
Strand 3
A
204 207parallel
Strand 4
A
124 128parallel
Strand 5
A
172 176parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 408first strand
Strand 2
A
534 540parallel
Strand 3
A
506 509parallel
Strand 4
A
432 436parallel
Strand 5
A
480 484parallel
Strand 6
A
457 459parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
367 370parallel
Strand 3
B
204 207parallel
Strand 4
B
124 128parallel
Strand 5
B
172 176parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 408first strand
Strand 2
B
534 540parallel
Strand 3
B
506 509parallel
Strand 4
B
432 436parallel
Strand 5
B
480 484parallel
Strand 6
B
457 459parallel
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