Analysis of interatomic Contacts of Structural Units in PDB entry:
3DL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DL9 entry

There are 2 chains in PDB entry 3DL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 38HIS 502
B
 PHE 39HIS 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3DL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 58Right-handed alpha
Helix 2
2
A
61 74Right-handed alpha
Helix 3
3
A
91 100Right-handed alpha
Helix 4
4
A
112 120Right-handed alpha
Helix 5
5
A
130 148Right-handed alpha
Helix 6
6
A
153 171Right-handed alpha
Helix 7
7
A
179 197Right-handed alpha
Helix 8
8
A
204 221Right-handed alpha
Helix 9
9
A
223 232Right-handed alpha
Helix 10
10
A
233 238Right-handed 310
Helix 11
11
A
241 266Right-handed alpha
Helix 12
12
A
275 287Right-handed alpha
Helix 13
13
A
296 329Right-handed alpha
Helix 14
14
A
329 345Right-handed alpha
Helix 15
15
A
351 357Right-handed 310
Helix 16
16
A
358 373Right-handed alpha
Helix 17
17
A
404 409Right-handed alpha
Helix 18
18
A
421 426Right-handed 310
Helix 19
19
A
450 468Right-handed alpha
Helix 20
20
A
473 477Right-handed 310
Helix 21
21
B
51 57Right-handed alpha
Helix 22
22
B
61 74Right-handed alpha
Helix 23
23
B
90 100Right-handed alpha
Helix 24
24
B
112 120Right-handed alpha
Helix 25
25
B
130 147Right-handed alpha
Helix 26
26
B
153 171Right-handed alpha
Helix 27
27
B
179 197Right-handed alpha
Helix 28
28
B
204 221Right-handed alpha
Helix 29
29
B
223 232Right-handed alpha
Helix 30
30
B
233 238Right-handed 310
Helix 31
31
B
242 264Right-handed alpha
Helix 32
32
B
275 286Right-handed alpha
Helix 33
33
B
296 329Right-handed alpha
Helix 34
34
B
329 344Right-handed alpha
Helix 35
35
B
351 357Right-handed 310
Helix 36
36
B
358 373Right-handed alpha
Helix 37
37
B
403 409Right-handed alpha
Helix 38
38
B
421 426Right-handed 310
Helix 39
39
B
450 468Right-handed alpha
Helix 40
40
B
473 477Right-handed 310
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There are 6 sheets in PDB entry 3DL9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
399 403parallel
Strand 4
A
381 382anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
392 394anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 472first strand
Strand 2
A
497 500anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 81first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
399 402parallel
Strand 4
B
381 382anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 389first strand
Strand 2
B
392 394anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 472first strand
Strand 2
B
497 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il