Analysis of interatomic Contacts of Structural Units in PDB entry:
3DLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DLA entry

There are 4 chains in PDB entry 3DLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 679
B
 MET 1GLY 679
C
 SER 0GLY 679
D
 SER 0GLY 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 3DLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
25 43Right-handed alpha
Helix 3
3
A
57 65Right-handed 310
Helix 4
4
A
66 84Right-handed alpha
Helix 5
5
A
85 87Right-handed 310
Helix 6
6
A
132 136Right-handed alpha
Helix 7
7
A
177 180Right-handed 310
Helix 8
8
A
184 192Right-handed alpha
Helix 9
9
A
208 224Right-handed alpha
Helix 10
10
A
276 286Right-handed alpha
Helix 11
11
A
286 296Right-handed alpha
Helix 12
12
A
296 302Right-handed alpha
Helix 13
13
A
332 358Right-handed alpha
Helix 14
14
A
370 387Right-handed alpha
Helix 15
15
A
390 392Right-handed 310
Helix 16
16
A
408 420Right-handed alpha
Helix 17
17
A
428 439Right-handed alpha
Helix 18
18
A
452 474Right-handed alpha
Helix 19
19
A
482 489Right-handed alpha
Helix 20
20
A
509 524Right-handed alpha
Helix 21
21
A
527 542Right-handed alpha
Helix 22
22
A
563 578Right-handed alpha
Helix 23
23
A
580 593Right-handed alpha
Helix 24
24
A
613 630Right-handed alpha
Helix 25
25
A
632 638Right-handed alpha
Helix 26
26
A
665 676Right-handed alpha
Helix 27
27
B
6 9Right-handed 310
Helix 28
28
B
25 43Right-handed alpha
Helix 29
29
B
57 65Right-handed 310
Helix 30
30
B
66 84Right-handed alpha
Helix 31
31
B
85 87Right-handed 310
Helix 32
32
B
132 136Right-handed alpha
Helix 33
33
B
177 180Right-handed 310
Helix 34
34
B
184 193Right-handed alpha
Helix 35
35
B
208 224Right-handed alpha
Helix 36
36
B
276 286Right-handed alpha
Helix 37
37
B
286 296Right-handed alpha
Helix 38
38
B
296 302Right-handed alpha
Helix 39
39
B
332 358Right-handed alpha
Helix 40
40
B
370 387Right-handed alpha
Helix 41
41
B
390 392Right-handed 310
Helix 42
42
B
409 420Right-handed alpha
Helix 43
43
B
428 439Right-handed alpha
Helix 44
44
B
453 474Right-handed alpha
Helix 45
45
B
482 489Right-handed alpha
Helix 46
46
B
509 524Right-handed alpha
Helix 47
47
B
526 543Right-handed alpha
Helix 48
48
B
563 578Right-handed alpha
Helix 49
49
B
580 593Right-handed alpha
Helix 50
50
B
605 609Right-handed 310
Helix 51
51
B
613 630Right-handed alpha
Helix 52
52
B
632 638Right-handed alpha
Helix 53
53
B
665 676Right-handed alpha
Helix 54
54
C
25 43Right-handed alpha
Helix 55
55
C
60 65Right-handed 310
Helix 56
56
C
66 85Right-handed alpha
Helix 57
57
C
131 135Right-handed alpha
Helix 58
58
C
177 181Right-handed 310
Helix 59
59
C
184 193Right-handed alpha
Helix 60
60
C
208 224Right-handed alpha
Helix 61
61
C
276 286Right-handed alpha
Helix 62
62
C
286 296Right-handed alpha
Helix 63
63
C
296 302Right-handed alpha
Helix 64
64
C
332 358Right-handed alpha
Helix 65
65
C
370 387Right-handed alpha
Helix 66
66
C
390 392Right-handed 310
Helix 67
67
C
409 420Right-handed alpha
Helix 68
68
C
428 440Right-handed alpha
Helix 69
69
C
441 446Right-handed 310
Helix 70
70
C
451 474Right-handed alpha
Helix 71
71
C
482 489Right-handed alpha
Helix 72
72
C
509 524Right-handed alpha
Helix 73
73
C
527 541Right-handed alpha
Helix 74
74
C
563 578Right-handed alpha
Helix 75
75
C
580 593Right-handed alpha
Helix 76
76
C
605 609Right-handed 310
Helix 77
77
C
613 630Right-handed alpha
Helix 78
78
C
632 638Right-handed alpha
Helix 79
79
C
665 676Right-handed alpha
Helix 80
80
D
25 43Right-handed alpha
Helix 81
81
D
60 65Right-handed 310
Helix 82
82
D
66 84Right-handed alpha
Helix 83
83
D
85 87Right-handed 310
Helix 84
84
D
132 136Right-handed alpha
Helix 85
85
D
177 180Right-handed 310
Helix 86
86
D
184 193Right-handed alpha
Helix 87
87
D
208 224Right-handed alpha
Helix 88
88
D
276 286Right-handed alpha
Helix 89
89
D
286 296Right-handed alpha
Helix 90
90
D
296 302Right-handed alpha
Helix 91
91
D
332 358Right-handed alpha
Helix 92
92
D
370 387Right-handed alpha
Helix 93
93
D
390 392Right-handed 310
Helix 94
94
D
410 420Right-handed alpha
Helix 95
95
D
428 439Right-handed alpha
Helix 96
96
D
441 446Right-handed 310
Helix 97
97
D
451 474Right-handed alpha
Helix 98
98
D
482 489Right-handed alpha
Helix 99
99
D
509 524Right-handed alpha
Helix 100
100
D
527 541Right-handed alpha
Helix 101
101
D
563 578Right-handed alpha
Helix 102
102
D
580 593Right-handed alpha
Helix 103
103
D
613 630Right-handed alpha
Helix 104
104
D
632 638Right-handed alpha
Helix 105
105
D
665 676Right-handed alpha
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There are 18 sheets in PDB entry 3DLA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
90 99anti-parallel
Strand 4
A
47 49parallel
Strand 5
A
11 18parallel
Strand 6
A
268 275anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
130 131anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
152 154anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 259first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
170 175parallel
Strand 6
A
159 163anti-parallel
Strand 7
A
304 308parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
394 398parallel
Strand 3
A
362 366parallel
Strand 4
A
475 479parallel
Strand 5
A
502 503parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
151 155anti-parallel
Strand 3
B
114 120parallel
Strand 4
B
102 111anti-parallel
Strand 5
B
90 99anti-parallel
Strand 6
B
47 49parallel
Strand 7
B
11 18parallel
Strand 8
B
268 275anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
130 131anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 259first strand
Strand 2
B
248 252anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
170 175parallel
Strand 6
B
159 163anti-parallel
Strand 7
B
304 308parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 425first strand
Strand 2
B
394 398parallel
Strand 3
B
362 366parallel
Strand 4
B
475 479parallel
Strand 5
B
502 503parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 120first strand
Strand 2
C
102 111anti-parallel
Strand 3
C
136 137parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 120first strand
Strand 2
C
102 111anti-parallel
Strand 3
C
90 99anti-parallel
Strand 4
C
47 49parallel
Strand 5
C
11 18parallel
Strand 6
C
268 275anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 148first strand
Strand 2
C
151 154anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 259first strand
Strand 2
C
248 252anti-parallel
Strand 3
C
227 231anti-parallel
Strand 4
C
196 200parallel
Strand 5
C
170 175parallel
Strand 6
C
159 163anti-parallel
Strand 7
C
304 308parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
422 425first strand
Strand 2
C
394 398parallel
Strand 3
C
362 366parallel
Strand 4
C
475 479parallel
Strand 5
C
502 503parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 148first strand
Strand 2
D
151 155anti-parallel
Strand 3
D
114 120parallel
Strand 4
D
102 111anti-parallel
Strand 5
D
90 99anti-parallel
Strand 6
D
47 49parallel
Strand 7
D
11 18parallel
Strand 8
D
268 275anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 127first strand
Strand 2
D
130 131anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 259first strand
Strand 2
D
248 252anti-parallel
Strand 3
D
227 232anti-parallel
Strand 4
D
196 201parallel
Strand 5
D
170 175parallel
Strand 6
D
159 163anti-parallel
Strand 7
D
304 308parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
422 425first strand
Strand 2
D
394 398parallel
Strand 3
D
362 366parallel
Strand 4
D
475 479parallel
Strand 5
D
502 503parallel
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