Analysis of interatomic Contacts of Structural Units in PDB entry:
3DLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DLR entry

There is 1 chain in PDB entry 3DLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 119HIS 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3DLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 174Right-handed alpha
Helix 2
2
A
187 192Right-handed alpha
Helix 3
3
A
192 203Right-handed alpha
Helix 4
4
A
220 236Right-handed alpha
Helix 5
5
A
238 240Right-handed 310
Helix 6
6
A
241 255Right-handed alpha
Helix 7
7
A
264 270Right-handed alpha
Helix 8
8
A
293 304Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3DLR.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
181 185parallel
Strand 5
A
205 209parallel
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