Analysis of interatomic Contacts of Structural Units in PDB entry:
3DM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DM5 entry

There are 2 chains in PDB entry 3DM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 435
B
 MET 1LEU 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 3DM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 20Right-handed alpha
Helix 2
2
A
24 42Right-handed alpha
Helix 3
3
A
45 63Right-handed alpha
Helix 4
4
A
70 87Right-handed alpha
Helix 5
5
A
112 126Right-handed alpha
Helix 6
6
A
141 152Right-handed alpha
Helix 7
7
A
153 155Right-handed 310
Helix 8
8
A
166 181Right-handed alpha
Helix 9
9
A
197 212Right-handed alpha
Helix 10
10
A
223 226Right-handed 310
Helix 11
11
A
227 238Right-handed alpha
Helix 12
12
A
254 264Right-handed alpha
Helix 13
13
A
285 294Right-handed alpha
Helix 14
14
A
298 311Right-handed alpha
Helix 15
15
A
312 325Right-handed alpha
Helix 16
16
A
329 342Right-handed alpha
Helix 17
17
A
368 380Right-handed alpha
Helix 18
18
A
383 389Right-handed alpha
Helix 19
19
A
390 393Right-handed 310
Helix 20
20
A
394 406Right-handed alpha
Helix 21
21
A
408 428Right-handed alpha
Helix 22
22
B
3 19Right-handed alpha
Helix 23
23
B
24 42Right-handed alpha
Helix 24
24
B
45 62Right-handed alpha
Helix 25
25
B
70 87Right-handed alpha
Helix 26
26
B
112 126Right-handed alpha
Helix 27
27
B
142 152Right-handed alpha
Helix 28
28
B
153 155Right-handed 310
Helix 29
29
B
166 181Right-handed alpha
Helix 30
30
B
197 202Right-handed alpha
Helix 31
31
B
204 212Right-handed alpha
Helix 32
32
B
223 226Right-handed 310
Helix 33
33
B
227 238Right-handed alpha
Helix 34
34
B
254 264Right-handed alpha
Helix 35
35
B
285 295Right-handed alpha
Helix 36
36
B
298 311Right-handed alpha
Helix 37
37
B
312 325Right-handed alpha
Helix 38
38
B
329 341Right-handed alpha
Helix 39
39
B
369 380Right-handed alpha
Helix 40
40
B
383 389Right-handed alpha
Helix 41
41
B
390 393Right-handed 310
Helix 42
42
B
395 406Right-handed alpha
Helix 43
43
B
408 428Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3DM5. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
131 135parallel
Strand 3
A
185 189parallel
Strand 4
A
101 106parallel
Strand 5
A
215 221parallel
Strand 6
A
242 247parallel
Strand 7
A
269 273parallel
Strand 8
A
281 283anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
131 136parallel
Strand 3
B
185 190parallel
Strand 4
B
101 107parallel
Strand 5
B
215 221parallel
Strand 6
B
242 247parallel
Strand 7
B
269 273parallel
Strand 8
B
281 283anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il