Analysis of interatomic Contacts of Structural Units in PDB entry:
3DM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DM9 entry

There is 1 chain in PDB entry 3DM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 0GLY 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3DM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
2 23Right-handed alpha
Helix 2
2
B
42 59Right-handed alpha
Helix 3
3
B
63 79Right-handed alpha
Helix 4
4
B
88 106Right-handed alpha
Helix 5
5
B
112 120Right-handed alpha
Helix 6
6
B
135 150Right-handed alpha
Helix 7
7
B
163 178Right-handed alpha
Helix 8
8
B
189 205Right-handed alpha
Helix 9
9
B
222 235Right-handed alpha
Helix 10
10
B
250 262Right-handed alpha
Helix 11
11
B
271 275Right-handed 310
Helix 12
12
B
278 289Right-handed alpha
Helix 13
13
B
300 302Right-handed 310
Helix 14
14
B
308 318Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3DM9. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
154 158parallel
Strand 3
B
208 212parallel
Strand 4
B
124 129parallel
Strand 5
B
238 244parallel
Strand 6
B
266 270parallel
Strand 7
B
292 296parallel
Strand 8
B
304 306anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il