Analysis of interatomic Contacts of Structural Units in PDB entry:
3DMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DMB entry

There are 3 chains in PDB entry 3DMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLY 145
B
 MSE 1GLY 145
C
 PRO 4GLY 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3DMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
92 100Right-handed alpha
Helix 4
4
A
101 108Right-handed alpha
Helix 5
5
A
110 114Right-handed 310
Helix 6
6
B
4 19Right-handed alpha
Helix 7
7
B
28 32Right-handed 310
Helix 8
8
B
57 63Right-handed alpha
Helix 9
9
B
92 100Right-handed alpha
Helix 10
10
B
101 107Right-handed alpha
Helix 11
11
B
110 114Right-handed 310
Helix 12
12
C
4 19Right-handed alpha
Helix 13
13
C
57 63Right-handed alpha
Helix 14
14
C
92 100Right-handed alpha
Helix 15
15
C
101 106Right-handed alpha
Helix 16
16
C
110 114Right-handed 310
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There are 3 sheets in PDB entry 3DMB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
48 52anti-parallel
Strand 4
A
118 131anti-parallel
Strand 5
A
79 89anti-parallel
Strand 6
A
66 73anti-parallel
Strand 7
A
20 25anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
66 73anti-parallel
Strand 4
B
79 89anti-parallel
Strand 5
B
117 131anti-parallel
Strand 6
B
48 53anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 23first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
48 53anti-parallel
Strand 4
C
117 131anti-parallel
Strand 5
C
79 89anti-parallel
Strand 6
C
66 73anti-parallel
Strand 7
C
20 23anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il