Analysis of interatomic Contacts of Structural Units in PDB entry:
3DME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DME entry

There are 2 chains in PDB entry 3DME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 368
B
 THR 3ALA 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3DME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
61 82Right-handed alpha
Helix 3
3
A
96 101Right-handed alpha
Helix 4
4
A
102 113Right-handed alpha
Helix 5
5
A
123 130Right-handed alpha
Helix 6
6
A
148 163Right-handed alpha
Helix 7
7
A
205 207Right-handed 310
Helix 8
8
A
208 215Right-handed alpha
Helix 9
9
A
220 224Right-handed 310
Helix 10
10
A
285 290Right-handed 310
Helix 11
11
A
291 298Right-handed alpha
Helix 12
12
A
333 338Right-handed alpha
Helix 13
13
A
351 368Right-handed alpha
Helix 14
14
B
13 26Right-handed alpha
Helix 15
15
B
42 46Right-handed 310
Helix 16
16
B
61 82Right-handed alpha
Helix 17
17
B
96 101Right-handed alpha
Helix 18
18
B
102 113Right-handed alpha
Helix 19
19
B
123 130Right-handed alpha
Helix 20
20
B
148 163Right-handed alpha
Helix 21
21
B
205 207Right-handed 310
Helix 22
22
B
208 215Right-handed alpha
Helix 23
23
B
220 224Right-handed 310
Helix 24
24
B
285 290Right-handed 310
Helix 25
25
B
291 298Right-handed alpha
Helix 26
26
B
333 338Right-handed alpha
Helix 27
27
B
351 368Right-handed alpha
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There are 12 sheets in PDB entry 3DME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
30 33parallel
Strand 3
A
5 10parallel
Strand 4
A
194 203parallel
Strand 5
A
184 188anti-parallel
Strand 6
A
173 178anti-parallel
Strand 7
A
216 217parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
30 33parallel
Strand 3
A
5 10parallel
Strand 4
A
194 203parallel
Strand 5
A
342 346parallel
Strand 6
A
330 332anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
145 147anti-parallel
Strand 3
A
85 86anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
90 94anti-parallel
Strand 4
A
246 249parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
268 270anti-parallel
Strand 3
A
228 236anti-parallel
Strand 4
A
275 277anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
268 270anti-parallel
Strand 3
A
228 236anti-parallel
Strand 4
A
309 318anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
30 33parallel
Strand 3
B
5 10parallel
Strand 4
B
194 203parallel
Strand 5
B
184 188anti-parallel
Strand 6
B
173 178anti-parallel
Strand 7
B
216 217parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
30 33parallel
Strand 3
B
5 10parallel
Strand 4
B
194 203parallel
Strand 5
B
342 346parallel
Strand 6
B
330 332anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
145 147anti-parallel
Strand 3
B
85 86anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
90 94anti-parallel
Strand 4
B
246 249parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
268 270anti-parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
275 277anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
268 270anti-parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
308 318anti-parallel
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