Analysis of interatomic Contacts of Structural Units in PDB entry:
3DMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DMP entry

There are 4 chains in PDB entry 3DMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 213
B
 SER 0GLY 213
C
 SER 0GLY 213
D
 SER 0GLY 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3DMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
31 51Right-handed alpha
Helix 3
3
A
87 98Right-handed alpha
Helix 4
4
A
141 153Right-handed alpha
Helix 5
5
A
157 159Right-handed 310
Helix 6
6
A
169 180Right-handed alpha
Helix 7
7
A
206 213Right-handed alpha
Helix 8
8
B
15 27Right-handed alpha
Helix 9
9
B
31 51Right-handed alpha
Helix 10
10
B
74 76Right-handed 310
Helix 11
11
B
87 98Right-handed alpha
Helix 12
12
B
141 154Right-handed alpha
Helix 13
13
B
157 159Right-handed 310
Helix 14
14
B
169 180Right-handed alpha
Helix 15
15
B
206 213Right-handed alpha
Helix 16
16
C
15 27Right-handed alpha
Helix 17
17
C
31 51Right-handed alpha
Helix 18
18
C
52 54Right-handed 310
Helix 19
19
C
74 76Right-handed 310
Helix 20
20
C
87 98Right-handed alpha
Helix 21
21
C
141 153Right-handed alpha
Helix 22
22
C
157 159Right-handed 310
Helix 23
23
C
169 180Right-handed alpha
Helix 24
24
C
206 213Right-handed alpha
Helix 25
25
D
15 27Right-handed alpha
Helix 26
26
D
31 51Right-handed alpha
Helix 27
27
D
74 76Right-handed 310
Helix 28
28
D
87 98Right-handed alpha
Helix 29
29
D
141 154Right-handed alpha
Helix 30
30
D
157 159Right-handed 310
Helix 31
31
D
169 180Right-handed alpha
Helix 32
32
D
206 213Right-handed alpha
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There are 20 sheets in PDB entry 3DMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
184 187parallel
Strand 4
A
161 164parallel
Strand 5
A
130 134parallel
Strand 6
A
78 84parallel
Strand 7
A
102 103parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
184 187parallel
Strand 4
A
161 164parallel
Strand 5
A
130 134parallel
Strand 6
A
78 84parallel
Strand 7
A
105 107parallel
Strand 8
A
120 122anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
67 73anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
167 168parallel
Strand 3
A
189 190parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
200 201anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 2first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
184 187parallel
Strand 4
B
161 164parallel
Strand 5
B
130 134parallel
Strand 6
B
78 84parallel
Strand 7
B
102 103parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 2first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
184 187parallel
Strand 4
B
161 164parallel
Strand 5
B
130 134parallel
Strand 6
B
78 84parallel
Strand 7
B
105 108parallel
Strand 8
B
118 122anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 62first strand
Strand 2
B
67 72anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
167 168parallel
Strand 3
B
189 190parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
200 201anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 2first strand
Strand 2
C
10 13anti-parallel
Strand 3
C
184 187parallel
Strand 4
C
161 164parallel
Strand 5
C
130 134parallel
Strand 6
C
78 84parallel
Strand 7
C
102 103parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 2first strand
Strand 2
C
10 13anti-parallel
Strand 3
C
184 187parallel
Strand 4
C
161 164parallel
Strand 5
C
130 134parallel
Strand 6
C
78 84parallel
Strand 7
C
105 109parallel
Strand 8
C
117 122anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 62first strand
Strand 2
C
67 72anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
167 168parallel
Strand 3
C
189 190parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
200 201anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 2first strand
Strand 2
D
10 13anti-parallel
Strand 3
D
184 187parallel
Strand 4
D
161 164parallel
Strand 5
D
130 134parallel
Strand 6
D
78 84parallel
Strand 7
D
102 103parallel
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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 2first strand
Strand 2
D
10 13anti-parallel
Strand 3
D
184 187parallel
Strand 4
D
161 164parallel
Strand 5
D
130 134parallel
Strand 6
D
78 84parallel
Strand 7
D
105 110parallel
Strand 8
D
116 122anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 62first strand
Strand 2
D
67 72anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 138first strand
Strand 2
D
167 168parallel
Strand 3
D
189 190parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
193 194first strand
Strand 2
D
200 201anti-parallel
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