Analysis of interatomic Contacts of Structural Units in PDB entry:
3DMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DMS entry

There is 1 chain in PDB entry 3DMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3GLU 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3DMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 60Right-handed alpha
Helix 2
2
A
73 81Right-handed alpha
Helix 3
3
A
87 97Right-handed alpha
Helix 4
4
A
115 124Right-handed alpha
Helix 5
5
A
145 149Right-handed 310
Helix 6
6
A
159 164Right-handed 310
Helix 7
7
A
171 184Right-handed alpha
Helix 8
8
A
192 196Right-handed 310
Helix 9
9
A
204 222Right-handed alpha
Helix 10
10
A
239 256Right-handed alpha
Helix 11
11
A
284 294Right-handed alpha
Helix 12
12
A
295 298Right-handed 310
Helix 13
13
A
304 319Right-handed alpha
Helix 14
14
A
344 348Right-handed 310
Helix 15
15
A
355 369Right-handed alpha
Helix 16
16
A
371 389Right-handed alpha
Helix 17
17
A
392 397Right-handed alpha
Helix 18
18
A
406 417Right-handed alpha
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There are 4 sheets in PDB entry 3DMS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
23 24anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
30 34parallel
Strand 3
A
99 102parallel
Strand 4
A
335 339parallel
Strand 5
A
326 330anti-parallel
Strand 6
A
128 133anti-parallel
Strand 7
A
151 156anti-parallel
Strand 8
A
300 303parallel
Strand 9
A
226 231parallel
Strand 10
A
276 283parallel
Strand 11
A
266 269anti-parallel
Strand 12
A
258 259anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
198 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
403 404parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il