Analysis of interatomic Contacts of Structural Units in PDB entry:
3DMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DMT entry

There are 5 chains in PDB entry 3DMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 359
B
 MET 1LEU 359
C
 MET 1SER 165
C
 THR 167LEU 359
D
 MET 1LEU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3DMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
93 97Right-handed 310
Helix 4
4
A
98 103Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
121 127Right-handed alpha
Helix 7
7
A
149 153Right-handed 310
Helix 8
8
A
165 181Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
227 236Right-handed alpha
Helix 11
11
A
237 240Right-handed 310
Helix 12
12
A
269 283Right-handed alpha
Helix 13
13
A
297 302Right-handed 310
Helix 14
14
A
312 318Right-handed alpha
Helix 15
15
A
336 355Right-handed alpha
Helix 16
16
B
11 24Right-handed alpha
Helix 17
17
B
42 51Right-handed alpha
Helix 18
18
B
93 97Right-handed 310
Helix 19
19
B
98 103Right-handed alpha
Helix 20
20
B
116 126Right-handed alpha
Helix 21
21
B
149 153Right-handed 310
Helix 22
22
B
165 181Right-handed alpha
Helix 23
23
B
211 215Right-handed 310
Helix 24
24
B
227 236Right-handed alpha
Helix 25
25
B
237 240Right-handed 310
Helix 26
26
B
269 283Right-handed alpha
Helix 27
27
B
297 302Right-handed 310
Helix 28
28
B
312 318Right-handed alpha
Helix 29
29
B
336 358Right-handed alpha
Helix 30
30
C
11 24Right-handed alpha
Helix 31
31
C
42 52Right-handed alpha
Helix 32
32
C
93 97Right-handed 310
Helix 33
33
C
98 103Right-handed alpha
Helix 34
34
C
116 121Right-handed alpha
Helix 35
35
C
121 126Right-handed alpha
Helix 36
36
C
149 153Right-handed 310
Helix 37
37
C
165 181Right-handed alpha
Helix 38
38
C
211 215Right-handed 310
Helix 39
39
C
216 220Right-handed 310
Helix 40
40
C
227 236Right-handed alpha
Helix 41
41
C
237 240Right-handed 310
Helix 42
42
C
269 282Right-handed alpha
Helix 43
43
C
297 302Right-handed 310
Helix 44
44
C
312 318Right-handed alpha
Helix 45
45
C
336 358Right-handed alpha
Helix 46
46
D
11 24Right-handed alpha
Helix 47
47
D
42 51Right-handed alpha
Helix 48
48
D
93 97Right-handed 310
Helix 49
49
D
98 103Right-handed alpha
Helix 50
50
D
116 121Right-handed alpha
Helix 51
51
D
121 126Right-handed alpha
Helix 52
52
D
149 153Right-handed 310
Helix 53
53
D
165 181Right-handed alpha
Helix 54
54
D
211 215Right-handed 310
Helix 55
55
D
227 236Right-handed alpha
Helix 56
56
D
237 240Right-handed 310
Helix 57
57
D
269 283Right-handed alpha
Helix 58
58
D
297 302Right-handed 310
Helix 59
59
D
312 318Right-handed alpha
Helix 60
60
D
336 357Right-handed alpha
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There are 10 sheets in PDB entry 3DMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
83 89anti-parallel
Strand 4
A
31 38parallel
Strand 5
A
3 8parallel
Strand 6
A
106 109parallel
Strand 7
A
130 133parallel
Strand 8
A
160 162parallel
Strand 9
A
142 143parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
243 250anti-parallel
Strand 3
A
187 195parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
326 333anti-parallel
Strand 6
A
308 311anti-parallel
Strand 7
A
289 292parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
77 80anti-parallel
Strand 3
B
83 89anti-parallel
Strand 4
B
31 38parallel
Strand 5
B
3 8parallel
Strand 6
B
106 109parallel
Strand 7
B
130 133parallel
Strand 8
B
160 162parallel
Strand 9
B
142 143parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
57 58anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
243 250anti-parallel
Strand 3
B
187 195parallel
Strand 4
B
256 263anti-parallel
Strand 5
B
326 333anti-parallel
Strand 6
B
308 311anti-parallel
Strand 7
B
289 292parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
77 80anti-parallel
Strand 3
C
83 89anti-parallel
Strand 4
C
31 38parallel
Strand 5
C
3 8parallel
Strand 6
C
106 109parallel
Strand 7
C
130 133parallel
Strand 8
C
160 162parallel
Strand 9
C
142 143parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 225first strand
Strand 2
C
243 250anti-parallel
Strand 3
C
187 195parallel
Strand 4
C
256 263anti-parallel
Strand 5
C
326 333anti-parallel
Strand 6
C
308 311anti-parallel
Strand 7
C
289 292parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 66first strand
Strand 2
D
77 80anti-parallel
Strand 3
D
83 89anti-parallel
Strand 4
D
31 38parallel
Strand 5
D
3 8parallel
Strand 6
D
106 109parallel
Strand 7
D
130 133parallel
Strand 8
D
160 162parallel
Strand 9
D
142 143parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 53first strand
Strand 2
D
57 58anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 225first strand
Strand 2
D
243 250anti-parallel
Strand 3
D
187 195parallel
Strand 4
D
256 263anti-parallel
Strand 5
D
326 333anti-parallel
Strand 6
D
308 311anti-parallel
Strand 7
D
289 292parallel
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