Analysis of interatomic Contacts of Structural Units in PDB entry:
3DMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DMY entry

There are 2 chains in PDB entry 3DMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 101GLN 555
B
 ALA 101GLN 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3DMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
107 115Right-handed alpha
Helix 2
2
A
126 140Right-handed alpha
Helix 3
3
A
152 166Right-handed alpha
Helix 4
4
A
203 216Right-handed alpha
Helix 5
5
A
237 249Right-handed alpha
Helix 6
6
A
264 279Right-handed alpha
Helix 7
7
A
304 326Right-handed alpha
Helix 8
8
A
339 354Right-handed alpha
Helix 9
9
A
362 364Right-handed 310
Helix 10
10
A
380 385Right-handed alpha
Helix 11
11
A
394 404Right-handed alpha
Helix 12
12
A
405 407Right-handed 310
Helix 13
13
A
426 441Right-handed alpha
Helix 14
14
A
463 474Right-handed alpha
Helix 15
15
A
481 493Right-handed alpha
Helix 16
16
A
505 510Right-handed alpha
Helix 17
17
A
518 528Right-handed alpha
Helix 18
18
A
544 555Right-handed alpha
Helix 19
19
B
107 115Right-handed alpha
Helix 20
20
B
126 140Right-handed alpha
Helix 21
21
B
152 166Right-handed alpha
Helix 22
22
B
203 216Right-handed alpha
Helix 23
23
B
237 250Right-handed alpha
Helix 24
24
B
264 279Right-handed alpha
Helix 25
25
B
304 326Right-handed alpha
Helix 26
26
B
339 354Right-handed alpha
Helix 27
27
B
380 385Right-handed alpha
Helix 28
28
B
394 403Right-handed alpha
Helix 29
29
B
404 407Right-handed 310
Helix 30
30
B
426 442Right-handed alpha
Helix 31
31
B
463 474Right-handed alpha
Helix 32
32
B
481 492Right-handed alpha
Helix 33
33
B
505 509Right-handed 310
Helix 34
34
B
518 528Right-handed alpha
Helix 35
35
B
544 555Right-handed alpha
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There are 8 sheets in PDB entry 3DMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
532 535parallel
Strand 3
A
513 515parallel
Strand 4
A
120 123parallel
Strand 5
A
143 146parallel
Strand 6
A
170 171parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
183 186anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
196 200parallel
Strand 3
A
255 260parallel
Strand 4
A
282 286parallel
Strand 5
A
299 302parallel
Strand 6
A
295 296anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 370first strand
Strand 2
A
373 377anti-parallel
Strand 3
A
332 337parallel
Strand 4
A
410 418parallel
Strand 5
A
449 455parallel
Strand 6
A
477 478parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
532 535parallel
Strand 3
B
513 515parallel
Strand 4
B
120 123parallel
Strand 5
B
143 146parallel
Strand 6
B
170 171parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
183 186anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
196 200parallel
Strand 3
B
255 260parallel
Strand 4
B
282 286parallel
Strand 5
B
299 302parallel
Strand 6
B
295 296anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 370first strand
Strand 2
B
373 377anti-parallel
Strand 3
B
332 337parallel
Strand 4
B
410 418parallel
Strand 5
B
449 455parallel
Strand 6
B
477 479parallel
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