Analysis of interatomic Contacts of Structural Units in PDB entry:
3DNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DNM entry

There are 4 chains in PDB entry 3DNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13SER 309
B
 ASP 13ILE 308
C
 THR 14ILE 308
D
 LYS 15ILE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3DNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
99 109Right-handed alpha
Helix 4
4
A
128 146Right-handed alpha
Helix 5
5
A
147 149Right-handed 310
Helix 6
6
A
157 174Right-handed alpha
Helix 7
7
A
194 200Right-handed alpha
Helix 8
8
A
201 204Right-handed 310
Helix 9
9
A
208 221Right-handed alpha
Helix 10
10
A
231 235Right-handed 310
Helix 11
11
A
253 267Right-handed alpha
Helix 12
12
A
282 286Right-handed 310
Helix 13
13
A
290 308Right-handed alpha
Helix 14
14
B
17 31Right-handed alpha
Helix 15
15
B
37 50Right-handed alpha
Helix 16
16
B
99 110Right-handed alpha
Helix 17
17
B
128 146Right-handed alpha
Helix 18
18
B
147 149Right-handed 310
Helix 19
19
B
157 173Right-handed alpha
Helix 20
20
B
194 201Right-handed alpha
Helix 21
21
B
202 204Right-handed 310
Helix 22
22
B
208 213Right-handed alpha
Helix 23
23
B
216 221Right-handed alpha
Helix 24
24
B
231 235Right-handed 310
Helix 25
25
B
253 267Right-handed alpha
Helix 26
26
B
282 286Right-handed 310
Helix 27
27
B
290 308Right-handed alpha
Helix 28
28
C
17 31Right-handed alpha
Helix 29
29
C
40 49Right-handed alpha
Helix 30
30
C
96 98Right-handed 310
Helix 31
31
C
99 111Right-handed alpha
Helix 32
32
C
128 146Right-handed alpha
Helix 33
33
C
147 149Right-handed 310
Helix 34
34
C
158 174Right-handed alpha
Helix 35
35
C
194 200Right-handed alpha
Helix 36
36
C
208 221Right-handed alpha
Helix 37
37
C
231 235Right-handed 310
Helix 38
38
C
253 267Right-handed alpha
Helix 39
39
C
282 286Right-handed 310
Helix 40
40
C
291 308Right-handed alpha
Helix 41
41
D
17 31Right-handed alpha
Helix 42
42
D
37 50Right-handed alpha
Helix 43
43
D
99 111Right-handed alpha
Helix 44
44
D
128 146Right-handed alpha
Helix 45
45
D
147 149Right-handed 310
Helix 46
46
D
157 173Right-handed alpha
Helix 47
47
D
195 199Right-handed 310
Helix 48
48
D
200 204Right-handed 310
Helix 49
49
D
208 221Right-handed alpha
Helix 50
50
D
231 235Right-handed 310
Helix 51
51
D
253 266Right-handed alpha
Helix 52
52
D
282 287Right-handed 310
Helix 53
53
D
291 306Right-handed alpha
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There are 2 sheets in PDB entry 3DNM. Click on sheet of interest to get list of strands forming it: A, B,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
82 86parallel
Strand 5
A
151 156parallel
Strand 6
A
181 184parallel
Strand 7
A
243 250parallel
Strand 8
A
271 280parallel
Strand 9
B
271 276anti-parallel
Strand 10
B
243 248parallel
Strand 11
B
180 184parallel
Strand 12
B
151 156parallel
Strand 13
B
82 86parallel
Strand 14
B
113 117parallel
Strand 15
B
68 74anti-parallel
Strand 16
B
64 65anti-parallel
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There are 32 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
82 86parallel
Strand 5
A
151 156parallel
Strand 6
A
181 184parallel
Strand 7
A
243 250parallel
Strand 8
A
271 280parallel
Strand 9
B
271 276anti-parallel
Strand 10
B
243 248parallel
Strand 11
B
180 184parallel
Strand 12
B
151 156parallel
Strand 13
B
82 86parallel
Strand 14
B
113 117parallel
Strand 15
B
68 74anti-parallel
Strand 16
B
59 61anti-parallel
Strand 17
C
58 65anti-parallel
Strand 18
C
68 75anti-parallel
Strand 19
C
113 117anti-parallel
Strand 20
C
82 86parallel
Strand 21
C
151 156parallel
Strand 22
C
180 184parallel
Strand 23
C
243 250parallel
Strand 24
C
271 280parallel
Strand 25
D
271 280anti-parallel
Strand 26
D
243 250parallel
Strand 27
D
180 184parallel
Strand 28
D
151 156parallel
Strand 29
D
82 86parallel
Strand 30
D
113 117parallel
Strand 31
D
68 75anti-parallel
Strand 32
D
58 65anti-parallel
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