Analysis of interatomic Contacts of Structural Units in PDB entry:
3DNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DNP entry

There is 1 chain in PDB entry 3DNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3DNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 35Right-handed alpha
Helix 2
2
A
46 57Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
120 126Right-handed alpha
Helix 6
6
A
143 151Right-handed alpha
Helix 7
7
A
163 165Right-handed 310
Helix 8
8
A
166 178Right-handed alpha
Helix 9
9
A
199 211Right-handed alpha
Helix 10
10
A
214 216Right-handed 310
Helix 11
11
A
224 226Right-handed 310
Helix 12
12
A
227 234Right-handed alpha
Helix 13
13
A
244 251Right-handed alpha
Helix 14
14
A
261 277Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3DNP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
5 8parallel
Strand 3
A
218 222parallel
Strand 4
A
236 239parallel
Strand 5
A
253 254parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
70 72anti-parallel
Strand 3
A
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
111 113parallel
Strand 3
A
102 106anti-parallel
Strand 4
A
157 161anti-parallel
Strand 5
A
190 195anti-parallel
Strand 6
A
181 187anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il