Analysis of interatomic Contacts of Structural Units in PDB entry:
3DNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DNV entry

There are 3 chains in PDB entry 3DNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TYR 437
B
 PHE 4LYS 74
T
 A 699 G 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3DNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed alpha
Helix 2
2
A
54 63Right-handed alpha
Helix 3
3
A
68 79Right-handed alpha
Helix 4
4
A
85 94Right-handed alpha
Helix 5
5
A
121 132Right-handed alpha
Helix 6
6
A
198 213Right-handed alpha
Helix 7
7
A
255 259Right-handed alpha
Helix 8
8
A
262 266Right-handed 310
Helix 9
9
A
274 283Right-handed alpha
Helix 10
10
A
287 305Right-handed alpha
Helix 11
11
A
311 314Right-handed 310
Helix 12
12
A
321 323Right-handed 310
Helix 13
13
A
346 349Right-handed 310
Helix 14
14
A
367 369Right-handed 310
Helix 15
15
A
370 382Right-handed alpha
Helix 16
16
A
384 408Right-handed alpha
Helix 17
17
A
415 435Right-handed alpha
Helix 18
18
B
9 24Right-handed alpha
Helix 19
19
B
27 36Right-handed alpha
Helix 20
20
B
38 48Right-handed alpha
Helix 21
21
B
49 52Right-handed 310
Helix 22
22
B
53 64Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3DNV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
4 7anti-parallel
Strand 4
A
102 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
149 150parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
178 181anti-parallel
Strand 5
A
228 234anti-parallel
Strand 6
A
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
247 249anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
316 319anti-parallel
Strand 3
A
325 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
362 365anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il