Analysis of interatomic Contacts of Structural Units in PDB entry:
3DO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DO5 entry

There is 1 chain in PDB entry 3DO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3DO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
23 32Right-handed alpha
Helix 3
3
A
51 63Right-handed alpha
Helix 4
4
A
70 78Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
115 132Right-handed alpha
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
148 154Right-handed alpha
Helix 9
9
A
169 183Right-handed alpha
Helix 10
10
A
185 196Right-handed alpha
Helix 11
11
A
203 208Right-handed alpha
Helix 12
12
A
209 223Right-handed alpha
Helix 13
13
A
228 232Right-handed 310
Helix 14
14
A
241 250Right-handed alpha
Helix 15
15
A
277 281Right-handed 310
Helix 16
16
A
306 323Right-handed alpha
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There are 2 sheets in PDB entry 3DO5. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
2 7parallel
Strand 4
A
82 85parallel
Strand 5
A
109 112parallel
Strand 6
A
136 137parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
266 274parallel
Strand 3
A
253 261anti-parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
286 292anti-parallel
Strand 6
A
297 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il