Analysis of interatomic Contacts of Structural Units in PDB entry:
3DO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DO6 entry

There are 2 chains in PDB entry 3DO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0SER 542
B
 GLY 0SER 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 3DO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed alpha
Helix 2
2
A
14 16Right-handed 310
Helix 3
3
A
31 36Right-handed alpha
Helix 4
4
A
58 73Right-handed alpha
Helix 5
5
A
85 92Right-handed alpha
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
116 138Right-handed alpha
Helix 8
8
A
159 163Right-handed 310
Helix 9
9
A
171 175Right-handed 310
Helix 10
10
A
188 197Right-handed alpha
Helix 11
11
A
199 209Right-handed alpha
Helix 12
12
A
223 227Right-handed alpha
Helix 13
13
A
228 236Right-handed alpha
Helix 14
14
A
269 280Right-handed alpha
Helix 15
15
A
293 301Right-handed alpha
Helix 16
16
A
301 307Right-handed alpha
Helix 17
17
A
318 326Right-handed alpha
Helix 18
18
A
329 333Right-handed 310
Helix 19
19
A
337 358Right-handed alpha
Helix 20
20
A
373 386Right-handed alpha
Helix 21
21
A
395 400Right-handed alpha
Helix 22
22
A
401 403Right-handed 310
Helix 23
23
A
404 415Right-handed alpha
Helix 24
24
A
429 441Right-handed alpha
Helix 25
25
A
450 463Right-handed alpha
Helix 26
26
A
525 530Right-handed 310
Helix 27
27
B
3 11Right-handed alpha
Helix 28
28
B
14 16Right-handed 310
Helix 29
29
B
31 36Right-handed alpha
Helix 30
30
B
58 73Right-handed alpha
Helix 31
31
B
85 92Right-handed alpha
Helix 32
32
B
106 112Right-handed alpha
Helix 33
33
B
116 138Right-handed alpha
Helix 34
34
B
159 163Right-handed 310
Helix 35
35
B
171 175Right-handed 310
Helix 36
36
B
188 197Right-handed alpha
Helix 37
37
B
199 210Right-handed alpha
Helix 38
38
B
223 227Right-handed alpha
Helix 39
39
B
228 236Right-handed alpha
Helix 40
40
B
269 280Right-handed alpha
Helix 41
41
B
293 301Right-handed alpha
Helix 42
42
B
301 307Right-handed alpha
Helix 43
43
B
318 326Right-handed alpha
Helix 44
44
B
329 333Right-handed 310
Helix 45
45
B
337 358Right-handed alpha
Helix 46
46
B
373 388Right-handed alpha
Helix 47
47
B
395 400Right-handed alpha
Helix 48
48
B
401 403Right-handed 310
Helix 49
49
B
404 415Right-handed alpha
Helix 50
50
B
429 441Right-handed alpha
Helix 51
51
B
450 463Right-handed alpha
Helix 52
52
B
525 530Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 3DO6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
25 28anti-parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
102 105anti-parallel
Strand 5
A
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
25 28anti-parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
252 255anti-parallel
Strand 5
A
77 81parallel
Strand 6
A
282 286parallel
Strand 7
A
43 49parallel
Strand 8
A
312 317parallel
Strand 9
A
362 367parallel
Strand 10
A
390 394parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 149first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
220 222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
182 184parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
178 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
493 496parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
507 511parallel
Strand 3
A
498 502anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
538 539anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
26 28anti-parallel
Strand 3
B
243 247anti-parallel
Strand 4
B
102 105anti-parallel
Strand 5
B
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
26 28anti-parallel
Strand 3
B
243 247anti-parallel
Strand 4
B
252 255anti-parallel
Strand 5
B
77 81parallel
Strand 6
B
282 286parallel
Strand 7
B
43 49parallel
Strand 8
B
312 317parallel
Strand 9
B
362 367parallel
Strand 10
B
390 394parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 149first strand
Strand 2
B
211 215anti-parallel
Strand 3
B
220 222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
182 184parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
178 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 449first strand
Strand 2
B
493 496parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 473first strand
Strand 2
B
507 511parallel
Strand 3
B
498 502anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 533first strand
Strand 2
B
537 539anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il