Analysis of interatomic Contacts of Structural Units in PDB entry:
3DOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DOJ entry

There is 1 chain in PDB entry 3DOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ARG 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3DOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
32 35Right-handed 310
Helix 3
3
A
36 42Right-handed alpha
Helix 4
4
A
49 57Right-handed alpha
Helix 5
5
A
66 76Right-handed alpha
Helix 6
6
A
79 84Right-handed 310
Helix 7
7
A
97 111Right-handed alpha
Helix 8
8
A
123 130Right-handed alpha
Helix 9
9
A
139 153Right-handed alpha
Helix 10
10
A
164 194Right-handed alpha
Helix 11
11
A
197 208Right-handed alpha
Helix 12
12
A
212 224Right-handed alpha
Helix 13
13
A
232 250Right-handed alpha
Helix 14
14
A
254 270Right-handed alpha
Helix 15
15
A
276 279Right-handed 310
Helix 16
16
A
280 286Right-handed alpha
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There are 2 sheets in PDB entry 3DOJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
59 62parallel
Strand 5
A
89 92parallel
Strand 6
A
114 117parallel
Strand 7
A
132 138anti-parallel
Strand 8
A
120 121anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
59 62parallel
Strand 5
A
89 92parallel
Strand 6
A
114 117parallel
Strand 7
A
132 138anti-parallel
Strand 8
A
154 159parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il