Analysis of interatomic Contacts of Structural Units in PDB entry:
3DOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DOM entry

There are 4 chains in PDB entry 3DOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 437LEU 509
B
 ALA 2SER 59
C
 GLN 431ARG 507
D
 ALA 2MET 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3DOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
439 449Right-handed alpha
Helix 2
2
A
464 479Right-handed alpha
Helix 3
3
A
486 489Right-handed 310
Helix 4
4
A
497 509Right-handed alpha
Helix 5
5
B
13 28Right-handed alpha
Helix 6
6
B
46 58Right-handed alpha
Helix 7
7
C
434 449Right-handed alpha
Helix 8
8
C
464 478Right-handed alpha
Helix 9
9
C
497 507Right-handed alpha
Helix 10
10
D
13 25Right-handed alpha
Helix 11
11
D
46 61Right-handed alpha
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There are 2 sheets in PDB entry 3DOM. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 485first strand
Strand 2
A
490 494anti-parallel
Strand 3
A
452 460anti-parallel
Strand 4
B
3 11anti-parallel
Strand 5
B
39 42anti-parallel
Strand 6
B
31 36anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
481 485first strand
Strand 2
C
490 494anti-parallel
Strand 3
C
452 459anti-parallel
Strand 4
D
4 11anti-parallel
Strand 5
D
39 42anti-parallel
Strand 6
D
31 36anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il