Analysis of interatomic Contacts of Structural Units in PDB entry:
3DOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DOX entry

There are 3 chains in PDB entry 3DOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1PHE 1099
P
 SER 1TYR 4
Q
 PRO 1VAL 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3DOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 91Right-handed alpha
Helix 2
2
A
92 94Right-handed 310
Helix 3
3
A
1086 1091Right-handed alpha
Helix 4
4
A
1092 1094Right-handed 310
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There are 3 sheets in PDB entry 3DOX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
1096 1098anti-parallel
Strand 3
A
96 98anti-parallel
Strand 4
A
1003 1004anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
52 66anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
32 33parallel
Strand 5
A
84 85anti-parallel
Strand 6
A
18 24parallel
Strand 7
A
10 15anti-parallel
Strand 8
A
52 66anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1043 1049first strand
Strand 2
A
1052 1066anti-parallel
Strand 3
A
1069 1078anti-parallel
Strand 4
A
1032 1034parallel
Strand 5
A
1084 1085anti-parallel
Strand 6
A
1018 1024parallel
Strand 7
A
1010 1015anti-parallel
Strand 8
A
1052 1066anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il