Analysis of interatomic Contacts of Structural Units in PDB entry:
3DP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DP7 entry

There are 2 chains in PDB entry 3DP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 5LYS 355
B
 THR 6LYS 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3DP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 38Right-handed alpha
Helix 2
2
A
39 46Right-handed alpha
Helix 3
3
A
52 61Right-handed alpha
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
90 99Right-handed alpha
Helix 6
6
A
99 112Right-handed alpha
Helix 7
7
A
113 118Right-handed alpha
Helix 8
8
A
119 127Right-handed alpha
Helix 9
9
A
129 135Right-handed 310
Helix 10
10
A
140 145Right-handed alpha
Helix 11
11
A
146 148Right-handed 310
Helix 12
12
A
149 163Right-handed alpha
Helix 13
13
A
168 176Right-handed alpha
Helix 14
14
A
177 179Right-handed 310
Helix 15
15
A
191 201Right-handed alpha
Helix 16
16
A
211 223Right-handed alpha
Helix 17
17
A
227 229Right-handed 310
Helix 18
18
A
262 277Right-handed alpha
Helix 19
19
A
295 312Right-handed alpha
Helix 20
20
A
321 331Right-handed alpha
Helix 21
21
B
14 24Right-handed alpha
Helix 22
22
B
24 38Right-handed alpha
Helix 23
23
B
39 47Right-handed alpha
Helix 24
24
B
53 61Right-handed alpha
Helix 25
25
B
64 78Right-handed alpha
Helix 26
26
B
90 99Right-handed alpha
Helix 27
27
B
99 112Right-handed alpha
Helix 28
28
B
113 118Right-handed alpha
Helix 29
29
B
119 127Right-handed alpha
Helix 30
30
B
129 135Right-handed 310
Helix 31
31
B
144 148Right-handed 310
Helix 32
32
B
149 163Right-handed alpha
Helix 33
33
B
168 177Right-handed alpha
Helix 34
34
B
191 201Right-handed alpha
Helix 35
35
B
211 222Right-handed alpha
Helix 36
36
B
227 229Right-handed 310
Helix 37
37
B
262 275Right-handed alpha
Helix 38
38
B
289 293Right-handed 310
Helix 39
39
B
295 312Right-handed alpha
Helix 40
40
B
321 332Right-handed alpha
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There are 4 sheets in PDB entry 3DP7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
86 89anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
205 210parallel
Strand 3
A
182 186parallel
Strand 4
A
251 255parallel
Strand 5
A
282 287parallel
Strand 6
A
348 354anti-parallel
Strand 7
A
334 336anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
86 89anti-parallel
Strand 3
B
80 83anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 235first strand
Strand 2
B
205 210parallel
Strand 3
B
182 186parallel
Strand 4
B
251 255parallel
Strand 5
B
282 287parallel
Strand 6
B
347 354anti-parallel
Strand 7
B
334 343anti-parallel
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