Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPA entry

There is 1 chain in PDB entry 3DPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3DPA

There are 2 sheets in PDB entry 3DPA. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 7 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 13first strand
Strand 2
A
16 25anti-parallel
Strand 3
A
63 72anti-parallel
Strand 4
A
49 60anti-parallel
Strand 5
A
30 40anti-parallel
Strand 6
A
83 93anti-parallel
Strand 7
A
106 116anti-parallel
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There are 8 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 138first strand
Strand 2
A
140 145anti-parallel
Strand 3
A
176 182anti-parallel
Strand 4
A
170 174anti-parallel
Strand 5
A
149 155anti-parallel
Strand 6
A
190 195anti-parallel
Strand 7
A
199 208anti-parallel
Strand 8
A
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il