Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPI entry

There are 2 chains in PDB entry 3DPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PRO 273
B
 ASP 5THR 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3DPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
24 44Right-handed alpha
Helix 3
3
A
55 75Right-handed alpha
Helix 4
4
A
94 105Right-handed alpha
Helix 5
5
A
114 128Right-handed alpha
Helix 6
6
A
134 161Right-handed alpha
Helix 7
7
A
170 181Right-handed alpha
Helix 8
8
A
196 207Right-handed alpha
Helix 9
9
A
210 215Right-handed alpha
Helix 10
10
A
218 223Right-handed alpha
Helix 11
11
A
224 226Right-handed 310
Helix 12
12
A
238 248Right-handed alpha
Helix 13
13
A
252 272Right-handed alpha
Helix 14
14
B
6 17Right-handed alpha
Helix 15
15
B
24 43Right-handed alpha
Helix 16
16
B
55 75Right-handed alpha
Helix 17
17
B
94 105Right-handed alpha
Helix 18
18
B
114 128Right-handed alpha
Helix 19
19
B
134 161Right-handed alpha
Helix 20
20
B
170 177Right-handed alpha
Helix 21
21
B
196 208Right-handed alpha
Helix 22
22
B
238 248Right-handed alpha
Helix 23
23
B
252 265Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3DPI. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
80 85parallel
Strand 3
A
47 51parallel
Strand 4
A
163 165parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
80 85parallel
Strand 3
B
47 51parallel
Strand 4
B
163 165parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il