Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPK entry

There is 1 chain in PDB entry 3DPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 548GLU 912
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3DPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
572 576Right-handed 310
Helix 2
2
A
578 580Right-handed 310
Helix 3
3
A
623 641Right-handed alpha
Helix 4
4
A
671 677Right-handed alpha
Helix 5
5
A
698 772Right-handed alpha
Helix 6
6
A
780 782Right-handed 310
Helix 7
7
A
788 790Right-handed 310
Helix 8
8
A
802 806Right-handed 310
Helix 9
9
A
818 822Right-handed 310
Helix 10
10
A
823 830Right-handed alpha
Helix 11
11
A
833 850Right-handed alpha
Helix 12
12
A
862 871Right-handed alpha
Helix 13
13
A
882 893Right-handed alpha
Helix 14
14
A
896 900Right-handed 310
Helix 15
15
A
902 912Right-handed alpha
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There are 3 sheets in PDB entry 3DPK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
A
774 775anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 590first strand
Strand 2
A
594 602anti-parallel
Strand 3
A
610 618anti-parallel
Strand 4
A
660 664anti-parallel
Strand 5
A
649 653anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
784 787anti-parallel
Strand 3
A
791 794anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il