Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPN entry

There are 2 chains in PDB entry 3DPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33ALA 604
B
 SER 33ALA 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3DPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 54Right-handed alpha
Helix 2
2
A
56 61Right-handed alpha
Helix 3
3
A
67 82Right-handed alpha
Helix 4
4
A
86 99Right-handed alpha
Helix 5
5
A
155 162Right-handed alpha
Helix 6
6
A
171 183Right-handed alpha
Helix 7
7
A
188 190Right-handed 310
Helix 8
8
A
266 279Right-handed alpha
Helix 9
9
A
334 338Right-handed 310
Helix 10
10
A
349 358Right-handed alpha
Helix 11
11
A
377 386Right-handed alpha
Helix 12
12
A
405 417Right-handed alpha
Helix 13
13
A
422 431Right-handed alpha
Helix 14
14
A
440 457Right-handed alpha
Helix 15
15
A
499 510Right-handed alpha
Helix 16
16
A
571 577Right-handed alpha
Helix 17
17
A
580 597Right-handed alpha
Helix 18
18
B
33 52Right-handed alpha
Helix 19
19
B
56 61Right-handed alpha
Helix 20
20
B
67 81Right-handed alpha
Helix 21
21
B
86 99Right-handed alpha
Helix 22
22
B
100 102Right-handed 310
Helix 23
23
B
155 162Right-handed alpha
Helix 24
24
B
171 183Right-handed alpha
Helix 25
25
B
188 190Right-handed 310
Helix 26
26
B
266 277Right-handed alpha
Helix 27
27
B
334 338Right-handed 310
Helix 28
28
B
347 362Right-handed alpha
Helix 29
29
B
377 388Right-handed alpha
Helix 30
30
B
405 415Right-handed alpha
Helix 31
31
B
422 430Right-handed alpha
Helix 32
32
B
440 460Right-handed alpha
Helix 33
33
B
462 466Right-handed 310
Helix 34
34
B
470 474Right-handed 310
Helix 35
35
B
499 510Right-handed alpha
Helix 36
36
B
571 576Right-handed alpha
Helix 37
37
B
580 597Right-handed alpha
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There are 14 sheets in PDB entry 3DPN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
539 545anti-parallel
Strand 3
A
528 531anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
184 186anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
130 135anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
209 215anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
310 316anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
365 369parallel
Strand 5
A
489 493parallel
Strand 6
A
514 518parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
547 549anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
437 438anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
539 545anti-parallel
Strand 3
B
528 531anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
115 117anti-parallel
Strand 3
B
217 219anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
130 135anti-parallel
Strand 3
B
147 148anti-parallel
Strand 4
B
197 204anti-parallel
Strand 5
B
208 215anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
309 316anti-parallel
Strand 3
B
322 329anti-parallel
Strand 4
B
365 369parallel
Strand 5
B
489 493parallel
Strand 6
B
514 518parallel
Strand 7
B
566 567parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 394first strand
Strand 2
B
476 477anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 399first strand
Strand 2
B
548 550anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 434first strand
Strand 2
B
437 438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il