Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPT entry

There are 2 chains in PDB entry 3DPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 631SER 938
B
 ALA 629GLU 940
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3DPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
631 646Right-handed alpha
Helix 2
2
A
650 661Right-handed alpha
Helix 3
3
A
665 679Right-handed alpha
Helix 4
4
A
697 711Right-handed alpha
Helix 5
5
A
712 715Right-handed 310
Helix 6
6
A
723 730Right-handed alpha
Helix 7
7
A
749 763Right-handed alpha
Helix 8
8
A
777 780Right-handed 310
Helix 9
9
A
808 817Right-handed alpha
Helix 10
10
A
861 881Right-handed alpha
Helix 11
11
A
904 913Right-handed alpha
Helix 12
12
A
929 935Right-handed alpha
Helix 13
13
B
629 646Right-handed alpha
Helix 14
14
B
650 661Right-handed alpha
Helix 15
15
B
665 679Right-handed alpha
Helix 16
16
B
690 694Right-handed 310
Helix 17
17
B
697 711Right-handed alpha
Helix 18
18
B
712 715Right-handed 310
Helix 19
19
B
723 730Right-handed alpha
Helix 20
20
B
749 763Right-handed alpha
Helix 21
21
B
777 780Right-handed 310
Helix 22
22
B
808 817Right-handed alpha
Helix 23
23
B
861 881Right-handed alpha
Helix 24
24
B
904 913Right-handed alpha
Helix 25
25
B
929 935Right-handed alpha
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There are 8 sheets in PDB entry 3DPT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 649first strand
Strand 2
A
695 696anti-parallel
Strand 3
A
683 684anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 720first strand
Strand 2
A
773 775anti-parallel
Strand 3
A
767 768anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
821 827first strand
Strand 2
A
830 834anti-parallel
Strand 3
A
842 848anti-parallel
Strand 4
A
853 859anti-parallel
Strand 5
A
796 802anti-parallel
Strand 6
A
888 894anti-parallel
Strand 7
A
897 903anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 920first strand
Strand 2
A
925 928anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
648 649first strand
Strand 2
B
695 696anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
718 720first strand
Strand 2
B
773 775anti-parallel
Strand 3
B
767 768anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
821 827first strand
Strand 2
B
830 834anti-parallel
Strand 3
B
842 848anti-parallel
Strand 4
B
853 859anti-parallel
Strand 5
B
796 802anti-parallel
Strand 6
B
888 894anti-parallel
Strand 7
B
897 903anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
917 920first strand
Strand 2
B
925 928anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il