Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPY entry

There are 3 chains in PDB entry 3DPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 55VAL 377
B
 PRO 17PHE 423
C
 VAL 2007MET 2009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3DPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 73Right-handed 310
Helix 2
2
A
93 109Right-handed alpha
Helix 3
3
A
113 127Right-handed alpha
Helix 4
4
A
130 144Right-handed alpha
Helix 5
5
A
147 162Right-handed alpha
Helix 6
6
A
165 180Right-handed alpha
Helix 7
7
A
184 196Right-handed alpha
Helix 8
8
A
199 213Right-handed alpha
Helix 9
9
A
218 230Right-handed alpha
Helix 10
10
A
233 247Right-handed alpha
Helix 11
11
A
252 270Right-handed alpha
Helix 12
12
A
273 285Right-handed alpha
Helix 13
13
A
292 301Right-handed alpha
Helix 14
14
A
308 325Right-handed alpha
Helix 15
15
A
331 347Right-handed alpha
Helix 16
16
A
349 351Right-handed 310
Helix 17
17
A
352 368Right-handed alpha
Helix 18
18
B
27 34Right-handed 310
Helix 19
19
B
42 60Right-handed alpha
Helix 20
20
B
60 66Right-handed alpha
Helix 21
21
B
74 86Right-handed alpha
Helix 22
22
B
90 97Right-handed 310
Helix 23
23
B
99 115Right-handed alpha
Helix 24
24
B
119 134Right-handed alpha
Helix 25
25
B
149 164Right-handed alpha
Helix 26
26
B
165 172Right-handed alpha
Helix 27
27
B
173 183Right-handed alpha
Helix 28
28
B
200 214Right-handed alpha
Helix 29
29
B
224 232Right-handed alpha
Helix 30
30
B
248 263Right-handed alpha
Helix 31
31
B
264 268Right-handed 310
Helix 32
32
B
269 279Right-handed alpha
Helix 33
33
B
299 304Right-handed alpha
Helix 34
34
B
306 319Right-handed alpha
Helix 35
35
B
331 343Right-handed alpha
Helix 36
36
B
359 374Right-handed alpha
Helix 37
37
B
389 393Right-handed 310
Helix 38
38
B
404 417Right-handed alpha
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There are 2 sheets in PDB entry 3DPY. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
B
88 89parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 378first strand
Strand 2
B
381 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il