Analysis of interatomic Contacts of Structural Units in PDB entry:
3DQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DQG entry

There are 4 chains in PDB entry 3DQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 418GLU 565
B
 ASP 418GLU 565
C
 ASP 418GLU 565
D
 SER 415GLN 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3DQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
472 476Right-handed 310
Helix 2
2
A
533 552Right-handed alpha
Helix 3
3
B
472 476Right-handed 310
Helix 4
4
B
527 532Right-handed 310
Helix 5
5
B
533 552Right-handed alpha
Helix 6
6
C
472 476Right-handed 310
Helix 7
7
C
539 552Right-handed alpha
Helix 8
8
D
472 476Right-handed 310
Helix 9
9
D
533 549Right-handed alpha
Helix 10
10
D
550 554Right-handed 310
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There are 8 sheets in PDB entry 3DQG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 437first strand
Strand 2
A
424 428anti-parallel
Strand 3
A
460 467anti-parallel
Strand 4
A
477 485anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 527first strand
Strand 2
A
508 515anti-parallel
Strand 3
A
497 503anti-parallel
Strand 4
A
445 453anti-parallel
Strand 5
B
557 558anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 559first strand
Strand 2
B
445 453anti-parallel
Strand 3
B
497 503anti-parallel
Strand 4
B
509 515anti-parallel
Strand 5
B
521 526anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 437first strand
Strand 2
B
424 428anti-parallel
Strand 3
B
461 467anti-parallel
Strand 4
B
477 484anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
432 437first strand
Strand 2
C
424 428anti-parallel
Strand 3
C
460 467anti-parallel
Strand 4
C
477 485anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
521 527first strand
Strand 2
C
508 515anti-parallel
Strand 3
C
497 503anti-parallel
Strand 4
C
445 453anti-parallel
Strand 5
D
557 559anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
557 559first strand
Strand 2
D
445 453anti-parallel
Strand 3
D
497 503anti-parallel
Strand 4
D
508 515anti-parallel
Strand 5
D
521 527anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
432 437first strand
Strand 2
D
424 428anti-parallel
Strand 3
D
460 467anti-parallel
Strand 4
D
477 485anti-parallel
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