Analysis of interatomic Contacts of Structural Units in PDB entry:
3DQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DQP entry

There is 1 chain in PDB entry 3DQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3DQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
83 96Right-handed alpha
Helix 5
5
A
111 115Right-handed 310
Helix 6
6
A
117 123Right-handed alpha
Helix 7
7
A
123 140Right-handed alpha
Helix 8
8
A
174 186Right-handed alpha
Helix 9
9
A
187 191Right-handed 310
Helix 10
10
A
204 210Right-handed alpha
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There are 2 sheets in PDB entry 3DQP. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
66 69parallel
Strand 5
A
100 104parallel
Strand 6
A
144 150parallel
Strand 7
A
193 203parallel
Strand 8
A
161 164anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
172 173parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il