Analysis of interatomic Contacts of Structural Units in PDB entry:
3DR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DR2 entry

There are 2 chains in PDB entry 3DR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4PRO 305
B
 CYS 5PRO 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 3DR2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 33Right-handed alpha
Helix 2
2
A
54 56Right-handed 310
Helix 3
3
A
150 154Right-handed 310
Helix 4
4
A
155 159Right-handed 310
Helix 5
5
B
25 33Right-handed alpha
Helix 6
6
B
54 56Right-handed 310
Helix 7
7
B
150 154Right-handed 310
Helix 8
8
B
155 159Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 3DR2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
A
58 63anti-parallel
Strand 5
A
47 53anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
298 303anti-parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
281 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
252 254anti-parallel
Strand 5
A
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
99 103anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
144 147anti-parallel
Strand 3
A
169 174anti-parallel
Strand 4
A
182 187anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
201 206anti-parallel
Strand 3
A
216 223anti-parallel
Strand 4
A
226 234anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
58 63anti-parallel
Strand 5
B
47 53anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
38 41anti-parallel
Strand 3
B
298 303anti-parallel
Strand 4
B
290 295anti-parallel
Strand 5
B
281 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
252 254anti-parallel
Strand 5
B
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
99 103anti-parallel
Strand 3
B
108 112anti-parallel
Strand 4
B
118 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
144 147anti-parallel
Strand 3
B
169 174anti-parallel
Strand 4
B
182 187anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
201 206anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
226 234anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il