Analysis of interatomic Contacts of Structural Units in PDB entry:
3DRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DRW entry

There are 2 chains in PDB entry 3DRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -10HIS 450
B
 MET 1HIS 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3DRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 33Right-handed alpha
Helix 2
2
A
35 46Right-handed alpha
Helix 3
3
A
52 67Right-handed alpha
Helix 4
4
A
78 87Right-handed alpha
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
148 150Right-handed 310
Helix 8
8
A
193 197Right-handed 310
Helix 9
9
A
204 206Right-handed 310
Helix 10
10
A
207 215Right-handed alpha
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
235 253Right-handed alpha
Helix 13
13
A
266 277Right-handed alpha
Helix 14
14
A
278 281Right-handed 310
Helix 15
15
A
288 299Right-handed alpha
Helix 16
16
A
300 311Right-handed alpha
Helix 17
17
A
312 328Right-handed alpha
Helix 18
18
A
351 373Right-handed alpha
Helix 19
19
A
377 379Right-handed 310
Helix 20
20
A
380 386Right-handed alpha
Helix 21
21
A
392 407Right-handed alpha
Helix 22
22
A
430 448Right-handed alpha
Helix 23
23
B
23 33Right-handed alpha
Helix 24
24
B
35 46Right-handed alpha
Helix 25
25
B
52 67Right-handed alpha
Helix 26
26
B
78 87Right-handed alpha
Helix 27
27
B
96 108Right-handed alpha
Helix 28
28
B
121 126Right-handed alpha
Helix 29
29
B
148 150Right-handed 310
Helix 30
30
B
193 197Right-handed 310
Helix 31
31
B
204 206Right-handed 310
Helix 32
32
B
207 215Right-handed alpha
Helix 33
33
B
222 226Right-handed 310
Helix 34
34
B
235 253Right-handed alpha
Helix 35
35
B
266 278Right-handed alpha
Helix 36
36
B
279 281Right-handed 310
Helix 37
37
B
288 298Right-handed alpha
Helix 38
38
B
300 311Right-handed alpha
Helix 39
39
B
312 328Right-handed alpha
Helix 40
40
B
351 373Right-handed alpha
Helix 41
41
B
377 379Right-handed 310
Helix 42
42
B
380 385Right-handed alpha
Helix 43
43
B
392 407Right-handed alpha
Helix 44
44
B
430 448Right-handed alpha
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There are 6 sheets in PDB entry 3DRW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
112 115parallel
Strand 4
A
7 11parallel
Strand 5
A
217 220parallel
Strand 6
A
256 260parallel
Strand 7
A
283 287parallel
Strand 8
A
331 335parallel
Strand 9
A
339 345anti-parallel
Strand 10
A
412 418anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
184 190parallel
Strand 3
A
159 165anti-parallel
Strand 4
A
15 21parallel
Strand 5
A
91 95anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
177 179anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 146first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
112 116parallel
Strand 4
B
7 11parallel
Strand 5
B
217 220parallel
Strand 6
B
256 260parallel
Strand 7
B
283 287parallel
Strand 8
B
331 335parallel
Strand 9
B
339 344anti-parallel
Strand 10
B
413 418anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
184 190parallel
Strand 3
B
159 165anti-parallel
Strand 4
B
15 21parallel
Strand 5
B
91 95anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
176 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il