Analysis of interatomic Contacts of Structural Units in PDB entry:
3DRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DRY entry

There are 5 chains in PDB entry 3DRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 40HIS 210
B
 VAL 42HIS 210
C
 SER 33HIS 210
D
 ALA 34HIS 210
E
 VAL 42HIS 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3DRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 63Right-handed 310
Helix 2
2
A
69 75Right-handed alpha
Helix 3
3
A
77 84Right-handed 310
Helix 4
4
A
95 109Right-handed alpha
Helix 5
5
A
118 130Right-handed alpha
Helix 6
6
A
131 146Right-handed alpha
Helix 7
7
A
164 166Right-handed 310
Helix 8
8
A
167 175Right-handed alpha
Helix 9
9
B
60 64Right-handed 310
Helix 10
10
B
69 75Right-handed alpha
Helix 11
11
B
95 109Right-handed alpha
Helix 12
12
B
118 130Right-handed alpha
Helix 13
13
B
131 147Right-handed alpha
Helix 14
14
B
148 150Right-handed 310
Helix 15
15
B
167 175Right-handed alpha
Helix 16
16
C
60 65Right-handed 310
Helix 17
17
C
70 75Right-handed alpha
Helix 18
18
C
76 81Right-handed 310
Helix 19
19
C
95 109Right-handed alpha
Helix 20
20
C
118 130Right-handed alpha
Helix 21
21
C
131 150Right-handed alpha
Helix 22
22
C
164 166Right-handed 310
Helix 23
23
C
167 174Right-handed alpha
Helix 24
24
D
59 63Right-handed alpha
Helix 25
25
D
70 75Right-handed alpha
Helix 26
26
D
77 81Right-handed 310
Helix 27
27
D
95 109Right-handed alpha
Helix 28
28
D
118 130Right-handed alpha
Helix 29
29
D
131 147Right-handed alpha
Helix 30
30
D
167 174Right-handed alpha
Helix 31
31
E
60 62Right-handed 310
Helix 32
32
E
70 76Right-handed alpha
Helix 33
33
E
77 81Right-handed 310
Helix 34
34
E
95 109Right-handed alpha
Helix 35
35
E
118 130Right-handed alpha
Helix 36
36
E
131 146Right-handed alpha
Helix 37
37
E
167 174Right-handed alpha
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There are 10 sheets in PDB entry 3DRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
90 92parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
180 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
45 50anti-parallel
Strand 3
B
90 92parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 163first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
180 186anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 58first strand
Strand 2
C
45 50anti-parallel
Strand 3
C
90 92parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 163first strand
Strand 2
C
201 207anti-parallel
Strand 3
C
180 186anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 58first strand
Strand 2
D
45 50anti-parallel
Strand 3
D
90 92parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 163first strand
Strand 2
D
201 208anti-parallel
Strand 3
D
180 183anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 47first strand
Strand 2
E
56 58anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 163first strand
Strand 2
E
201 205anti-parallel
Strand 3
E
181 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il