Analysis of interatomic Contacts of Structural Units in PDB entry:
3DSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DSB entry

There are 2 chains in PDB entry 3DSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15HIS 166
B
 GLU 15HIS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3DSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 25Right-handed 310
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
47 61Right-handed alpha
Helix 4
4
A
62 65Right-handed 310
Helix 5
5
A
104 107Right-handed 310
Helix 6
6
A
110 126Right-handed alpha
Helix 7
7
A
142 149Right-handed alpha
Helix 8
8
B
23 25Right-handed 310
Helix 9
9
B
26 43Right-handed alpha
Helix 10
10
B
47 60Right-handed alpha
Helix 11
11
B
61 65Right-handed 310
Helix 12
12
B
104 107Right-handed 310
Helix 13
13
B
110 125Right-handed alpha
Helix 14
14
B
142 150Right-handed alpha
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There are 2 sheets in PDB entry 3DSB. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
75 87anti-parallel
Strand 4
A
92 102anti-parallel
Strand 5
A
129 137parallel
Strand 6
B
157 162anti-parallel
Strand 7
A
153 154anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
66 72anti-parallel
Strand 3
B
75 87anti-parallel
Strand 4
B
92 102anti-parallel
Strand 5
B
129 137parallel
Strand 6
A
157 162anti-parallel
Strand 7
B
153 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il