Analysis of interatomic Contacts of Structural Units in PDB entry:
3DSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DSZ entry

There are 2 chains in PDB entry 3DSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7GLY 178
B
 ASP 6GLY 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3DSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
23 28Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
145 159Right-handed alpha
Helix 5
5
A
162 164Right-handed 310
Helix 6
6
B
12 16Right-handed 310
Helix 7
7
B
23 28Right-handed alpha
Helix 8
8
B
42 47Right-handed 310
Helix 9
9
B
96 100Right-handed 310
Helix 10
10
B
145 159Right-handed alpha
Helix 11
11
B
162 164Right-handed 310
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There are 2 sheets in PDB entry 3DSZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
130 139anti-parallel
Strand 4
A
118 127anti-parallel
Strand 5
A
103 113anti-parallel
Strand 6
A
91 94anti-parallel
Strand 7
A
75 85anti-parallel
Strand 8
A
64 72anti-parallel
Strand 9
A
53 58anti-parallel
Strand 10
A
29 38anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
29 38anti-parallel
Strand 3
B
130 139anti-parallel
Strand 4
B
118 127anti-parallel
Strand 5
B
103 113anti-parallel
Strand 6
B
91 94anti-parallel
Strand 7
B
75 85anti-parallel
Strand 8
B
64 72anti-parallel
Strand 9
B
53 58anti-parallel
Strand 10
B
29 38anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il