Analysis of interatomic Contacts of Structural Units in PDB entry:
3DTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DTY entry

There are 4 chains in PDB entry 3DTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6HIS 397
B
 ILE 8TYR 389
D
 ILE 8GLU 390
E
 ARG 6HIS 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 3DTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 35Right-handed alpha
Helix 2
2
A
49 60Right-handed alpha
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
70 79Right-handed alpha
Helix 5
5
A
93 95Right-handed 310
Helix 6
6
A
96 107Right-handed alpha
Helix 7
7
A
120 134Right-handed alpha
Helix 8
8
A
142 146Right-handed 310
Helix 9
9
A
147 159Right-handed alpha
Helix 10
10
A
201 206Right-handed alpha
Helix 11
11
A
207 218Right-handed alpha
Helix 12
12
A
234 238Right-handed 310
Helix 13
13
A
312 316Right-handed 310
Helix 14
14
A
328 349Right-handed alpha
Helix 15
15
A
351 357Right-handed alpha
Helix 16
16
A
362 382Right-handed alpha
Helix 17
17
B
23 35Right-handed alpha
Helix 18
18
B
49 60Right-handed alpha
Helix 19
19
B
63 67Right-handed 310
Helix 20
20
B
70 80Right-handed alpha
Helix 21
21
B
93 95Right-handed 310
Helix 22
22
B
96 107Right-handed alpha
Helix 23
23
B
120 134Right-handed alpha
Helix 24
24
B
142 146Right-handed 310
Helix 25
25
B
147 159Right-handed alpha
Helix 26
26
B
201 206Right-handed alpha
Helix 27
27
B
207 218Right-handed alpha
Helix 28
28
B
234 238Right-handed 310
Helix 29
29
B
312 316Right-handed 310
Helix 30
30
B
328 349Right-handed alpha
Helix 31
31
B
351 357Right-handed alpha
Helix 32
32
B
362 382Right-handed alpha
Helix 33
33
D
23 35Right-handed alpha
Helix 34
34
D
49 60Right-handed alpha
Helix 35
35
D
63 67Right-handed 310
Helix 36
36
D
70 79Right-handed alpha
Helix 37
37
D
93 95Right-handed 310
Helix 38
38
D
96 107Right-handed alpha
Helix 39
39
D
120 134Right-handed alpha
Helix 40
40
D
142 146Right-handed 310
Helix 41
41
D
147 159Right-handed alpha
Helix 42
42
D
201 206Right-handed alpha
Helix 43
43
D
207 218Right-handed alpha
Helix 44
44
D
234 238Right-handed 310
Helix 45
45
D
312 317Right-handed alpha
Helix 46
46
D
328 349Right-handed alpha
Helix 47
47
D
362 382Right-handed alpha
Helix 48
48
E
25 35Right-handed alpha
Helix 49
49
E
49 59Right-handed alpha
Helix 50
50
E
63 67Right-handed 310
Helix 51
51
E
70 80Right-handed alpha
Helix 52
52
E
93 95Right-handed 310
Helix 53
53
E
96 107Right-handed alpha
Helix 54
54
E
120 134Right-handed alpha
Helix 55
55
E
142 146Right-handed 310
Helix 56
56
E
147 159Right-handed alpha
Helix 57
57
E
201 206Right-handed alpha
Helix 58
58
E
207 218Right-handed alpha
Helix 59
59
E
234 238Right-handed 310
Helix 60
60
E
312 316Right-handed 310
Helix 61
61
E
328 350Right-handed alpha
Helix 62
62
E
351 358Right-handed alpha
Helix 63
63
E
362 382Right-handed alpha
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There are 6 sheets in PDB entry 3DTY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
12 18parallel
Strand 3
A
87 91parallel
Strand 4
A
110 113parallel
Strand 5
A
138 140parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
223 231anti-parallel
Strand 3
A
243 250anti-parallel
Strand 4
A
255 261anti-parallel
Strand 5
A
165 173parallel
Strand 6
A
271 277anti-parallel
Strand 7
A
280 285anti-parallel
Strand 8
A
291 296anti-parallel
Strand 9
A
301 305anti-parallel
Strand 10
D
301 305anti-parallel
Strand 11
D
291 296anti-parallel
Strand 12
D
280 285anti-parallel
Strand 13
D
271 277anti-parallel
Strand 14
D
165 173anti-parallel
Strand 15
D
255 261parallel
Strand 16
D
243 250anti-parallel
Strand 17
D
223 231anti-parallel
Strand 18
D
387 388anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
12 17parallel
Strand 3
B
87 90parallel
Strand 4
B
110 113parallel
Strand 5
B
138 140parallel
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There are 18 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
223 231anti-parallel
Strand 3
B
243 250anti-parallel
Strand 4
B
255 261anti-parallel
Strand 5
B
165 173parallel
Strand 6
B
271 277anti-parallel
Strand 7
B
280 285anti-parallel
Strand 8
B
291 296anti-parallel
Strand 9
B
301 305anti-parallel
Strand 10
E
301 305anti-parallel
Strand 11
E
291 296anti-parallel
Strand 12
E
280 285anti-parallel
Strand 13
E
271 277anti-parallel
Strand 14
E
165 173anti-parallel
Strand 15
E
255 261parallel
Strand 16
E
243 250anti-parallel
Strand 17
E
223 231anti-parallel
Strand 18
E
387 388anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 45first strand
Strand 2
D
12 18parallel
Strand 3
D
87 91parallel
Strand 4
D
110 113parallel
Strand 5
D
138 140parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 45first strand
Strand 2
E
12 17parallel
Strand 3
E
87 90parallel
Strand 4
E
110 113parallel
Strand 5
E
138 140parallel
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