Analysis of interatomic Contacts of Structural Units in PDB entry:
3DU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DU5 entry

There are 2 chains in PDB entry 3DU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 596
B
 MET 1ILE 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3DU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
25 38Right-handed alpha
Helix 3
3
A
47 56Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
63 79Right-handed alpha
Helix 6
6
A
89 92Right-handed 310
Helix 7
7
A
100 104Right-handed 310
Helix 8
8
A
110 126Right-handed alpha
Helix 9
9
A
126 134Right-handed alpha
Helix 10
10
A
151 168Right-handed alpha
Helix 11
11
A
205 224Right-handed alpha
Helix 12
12
A
229 241Right-handed alpha
Helix 13
13
A
260 271Right-handed alpha
Helix 14
14
A
277 290Right-handed alpha
Helix 15
15
A
312 329Right-handed alpha
Helix 16
16
A
351 366Right-handed alpha
Helix 17
17
A
369 373Right-handed 310
Helix 18
18
A
412 417Right-handed 310
Helix 19
19
A
430 439Right-handed alpha
Helix 20
20
A
443 448Right-handed 310
Helix 21
21
A
449 454Right-handed alpha
Helix 22
22
A
459 488Right-handed alpha
Helix 23
23
A
496 519Right-handed alpha
Helix 24
24
A
528 545Right-handed alpha
Helix 25
25
A
547 562Right-handed alpha
Helix 26
26
A
574 579Right-handed 310
Helix 27
27
A
582 586Right-handed 310
Helix 28
28
B
8 12Right-handed 310
Helix 29
29
B
25 40Right-handed alpha
Helix 30
30
B
47 56Right-handed alpha
Helix 31
31
B
57 61Right-handed 310
Helix 32
32
B
63 79Right-handed alpha
Helix 33
33
B
89 92Right-handed 310
Helix 34
34
B
96 100Right-handed 310
Helix 35
35
B
107 109Right-handed 310
Helix 36
36
B
110 126Right-handed alpha
Helix 37
37
B
126 134Right-handed alpha
Helix 38
38
B
151 167Right-handed alpha
Helix 39
39
B
205 221Right-handed alpha
Helix 40
40
B
229 239Right-handed alpha
Helix 41
41
B
260 271Right-handed alpha
Helix 42
42
B
279 283Right-handed 310
Helix 43
43
B
285 290Right-handed alpha
Helix 44
44
B
312 328Right-handed alpha
Helix 45
45
B
329 332Right-handed 310
Helix 46
46
B
351 366Right-handed alpha
Helix 47
47
B
369 373Right-handed 310
Helix 48
48
B
414 417Right-handed 310
Helix 49
49
B
430 439Right-handed alpha
Helix 50
50
B
440 448Right-handed 310
Helix 51
51
B
449 454Right-handed alpha
Helix 52
52
B
459 488Right-handed alpha
Helix 53
53
B
496 519Right-handed alpha
Helix 54
54
B
528 545Right-handed alpha
Helix 55
55
B
546 548Right-handed 310
Helix 56
56
B
551 562Right-handed alpha
Helix 57
57
B
574 578Right-handed 310
Helix 58
58
B
582 586Right-handed 310
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There are 13 sheets in PDB entry 3DU5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
85 87anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
146 150anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
299 302anti-parallel
Strand 3
A
291 294anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
194 199anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 349first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
374 375anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
401 403anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
85 87anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
146 150anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
299 302anti-parallel
Strand 3
B
292 294anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
B
193 196anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
246 249anti-parallel
Strand 3
B
374 375anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 389first strand
Strand 2
B
392 395anti-parallel
Strand 3
B
401 403anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 412first strand
Strand 2
B
588 589parallel
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