Analysis of interatomic Contacts of Structural Units in PDB entry:
3DUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DUV entry

There are 2 chains in PDB entry 3DUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 254
B
 MSE 1ASN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3DUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 39Right-handed alpha
Helix 2
2
A
51 59Right-handed alpha
Helix 3
3
A
74 86Right-handed alpha
Helix 4
4
A
105 119Right-handed alpha
Helix 5
5
A
132 137Right-handed alpha
Helix 6
6
A
163 168Right-handed alpha
Helix 7
7
A
172 176Right-handed 310
Helix 8
8
A
193 200Right-handed alpha
Helix 9
9
A
205 212Right-handed alpha
Helix 10
10
A
215 221Right-handed alpha
Helix 11
11
A
240 253Right-handed alpha
Helix 12
12
B
18 21Right-handed 310
Helix 13
13
B
29 39Right-handed alpha
Helix 14
14
B
51 61Right-handed alpha
Helix 15
15
B
74 86Right-handed alpha
Helix 16
16
B
105 120Right-handed alpha
Helix 17
17
B
132 138Right-handed alpha
Helix 18
18
B
163 168Right-handed alpha
Helix 19
19
B
172 176Right-handed 310
Helix 20
20
B
193 202Right-handed alpha
Helix 21
21
B
205 212Right-handed alpha
Helix 22
22
B
215 221Right-handed alpha
Helix 23
23
B
240 253Right-handed alpha
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There are 5 sheets in PDB entry 3DUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
44 49parallel
Strand 3
A
4 8parallel
Strand 4
A
93 97parallel
Strand 5
A
183 192anti-parallel
Strand 6
A
143 146anti-parallel
Strand 7
A
152 156anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
44 49parallel
Strand 3
A
4 8parallel
Strand 4
A
93 97parallel
Strand 5
A
183 192anti-parallel
Strand 6
A
123 129anti-parallel
Strand 7
A
225 230parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
44 49parallel
Strand 3
B
3 9parallel
Strand 4
B
93 97parallel
Strand 5
B
183 192anti-parallel
Strand 6
B
123 129anti-parallel
Strand 7
B
225 229parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
27 28anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
152 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il