Analysis of interatomic Contacts of Structural Units in PDB entry:
3DUZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DUZ entry

There is 1 chain in PDB entry 3DUZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22GLY 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3DUZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed 310
Helix 2
2
A
98 109Right-handed alpha
Helix 3
3
A
123 125Right-handed 310
Helix 4
4
A
126 131Right-handed alpha
Helix 5
5
A
298 343Right-handed alpha
Helix 6
6
A
347 353Right-handed alpha
Helix 7
7
A
432 435Right-handed 310
Helix 8
8
A
436 453Right-handed alpha
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There are 6 sheets in PDB entry 3DUZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
219 231anti-parallel
Strand 4
A
45 58anti-parallel
Strand 5
A
266 270anti-parallel
Strand 6
A
261 263anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 95first strand
Strand 2
A
61 78anti-parallel
Strand 3
A
155 177anti-parallel
Strand 4
A
184 188anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
155 177anti-parallel
Strand 3
A
61 78anti-parallel
Strand 4
A
209 213anti-parallel
Strand 5
A
204 206anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
137 139anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
456 458parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 361first strand
Strand 2
A
367 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il