Analysis of interatomic Contacts of Structural Units in PDB entry:
3DV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DV9 entry

There is 1 chain in PDB entry 3DV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLN 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3DV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 14Right-handed alpha
Helix 2
2
A
34 49Right-handed alpha
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
83 99Right-handed alpha
Helix 6
6
A
109 120Right-handed alpha
Helix 7
7
A
135 143Right-handed alpha
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
154 158Right-handed 310
Helix 10
10
A
165 176Right-handed alpha
Helix 11
11
A
178 180Right-handed 310
Helix 12
12
A
188 198Right-handed alpha
Helix 13
13
A
211 217Right-handed alpha
Helix 14
14
A
226 242Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3DV9.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
123 127parallel
Strand 3
A
22 26parallel
Strand 4
A
182 186parallel
Strand 5
A
201 205parallel
Strand 6
A
222 224parallel
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