Analysis of interatomic Contacts of Structural Units in PDB entry:
3DVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DVX entry

There are 2 chains in PDB entry 3DVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0THR 190
B
 TYR 1ARG 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3DVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 51Right-handed alpha
Helix 2
2
A
65 67Right-handed 310
Helix 3
3
A
68 81Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
119 129Right-handed alpha
Helix 7
7
A
129 147Right-handed alpha
Helix 8
8
A
166 187Right-handed alpha
Helix 9
9
B
34 51Right-handed alpha
Helix 10
10
B
68 81Right-handed alpha
Helix 11
11
B
83 96Right-handed alpha
Helix 12
12
B
104 115Right-handed alpha
Helix 13
13
B
120 128Right-handed alpha
Helix 14
14
B
129 147Right-handed alpha
Helix 15
15
B
170 186Right-handed alpha
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There are 3 sheets in PDB entry 3DVX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
160 162anti-parallel
Strand 3
A
153 156anti-parallel
Strand 4
A
24 30anti-parallel
Strand 5
A
55 61parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 16first strand
Strand 2
B
158 162anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 61first strand
Strand 2
B
24 30parallel
Strand 3
B
153 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il