Analysis of interatomic Contacts of Structural Units in PDB entry:
3DW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DW8 entry

There are 10 chains in PDB entry 3DW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 8ALA 589
B
 ASN 8VAL 446
C
 PHE 6PRO 293
D
 MET 8ALA 589
E
 ASN 8VAL 446
F
 PHE 6PRO 293
G
 LEU 2LEU 2
G
 ARG 4ARG 4
H
 LEU 2LEU 2
H
 ARG 4ARG 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are137 helices in PDB entry 3DW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
34 42Right-handed alpha
Helix 4
4
A
45 50Right-handed alpha
Helix 5
5
A
50 58Right-handed alpha
Helix 6
6
A
62 75Right-handed alpha
Helix 7
7
A
77 81Right-handed 310
Helix 8
8
A
82 88Right-handed 310
Helix 9
9
A
89 97Right-handed alpha
Helix 10
10
A
101 117Right-handed alpha
Helix 11
11
A
120 127Right-handed alpha
Helix 12
12
A
127 137Right-handed alpha
Helix 13
13
A
140 148Right-handed alpha
Helix 14
14
A
159 174Right-handed alpha
Helix 15
15
A
178 194Right-handed alpha
Helix 16
16
A
199 204Right-handed alpha
Helix 17
17
A
204 213Right-handed alpha
Helix 18
18
A
217 233Right-handed alpha
Helix 19
19
A
239 244Right-handed alpha
Helix 20
20
A
244 252Right-handed alpha
Helix 21
21
A
256 266Right-handed alpha
Helix 22
22
A
266 272Right-handed alpha
Helix 23
23
A
275 291Right-handed alpha
Helix 24
24
A
295 304Right-handed alpha
Helix 25
25
A
305 311Right-handed alpha
Helix 26
26
A
314 325Right-handed alpha
Helix 27
27
A
326 331Right-handed alpha
Helix 28
28
A
338 346Right-handed alpha
Helix 29
29
A
356 364Right-handed alpha
Helix 30
30
A
365 374Right-handed alpha
Helix 31
31
A
377 387Right-handed alpha
Helix 32
32
A
388 393Right-handed alpha
Helix 33
33
A
397 402Right-handed alpha
Helix 34
34
A
403 413Right-handed alpha
Helix 35
35
A
416 425Right-handed alpha
Helix 36
36
A
426 433Right-handed alpha
Helix 37
37
A
435 441Right-handed alpha
Helix 38
38
A
442 448Right-handed alpha
Helix 39
39
A
449 453Right-handed 310
Helix 40
40
A
455 468Right-handed alpha
Helix 41
41
A
473 481Right-handed alpha
Helix 42
42
A
482 487Right-handed alpha
Helix 43
43
A
488 492Right-handed 310
Helix 44
44
A
494 509Right-handed alpha
Helix 45
45
A
512 521Right-handed alpha
Helix 46
46
A
521 529Right-handed alpha
Helix 47
47
A
533 548Right-handed alpha
Helix 48
48
A
554 559Right-handed alpha
Helix 49
49
A
559 568Right-handed alpha
Helix 50
50
A
572 581Right-handed alpha
Helix 51
51
B
26 29Right-handed 310
Helix 52
52
B
86 89Right-handed 310
Helix 53
53
B
221 225Right-handed 310
Helix 54
54
B
279 285Right-handed alpha
Helix 55
55
B
326 330Right-handed 310
Helix 56
56
B
332 339Right-handed alpha
Helix 57
57
B
340 344Right-handed 310
Helix 58
58
B
411 413Right-handed 310
Helix 59
59
C
6 19Right-handed alpha
Helix 60
60
C
24 41Right-handed alpha
Helix 61
61
C
61 73Right-handed alpha
Helix 62
62
C
92 107Right-handed alpha
Helix 63
63
C
120 127Right-handed alpha
Helix 64
64
C
128 138Right-handed alpha
Helix 65
65
C
140 152Right-handed alpha
Helix 66
66
C
176 183Right-handed alpha
Helix 67
67
C
193 201Right-handed alpha
Helix 68
68
C
221 232Right-handed alpha
Helix 69
69
C
264 268Right-handed 310
Helix 70
70
D
9 20Right-handed alpha
Helix 71
71
D
24 33Right-handed alpha
Helix 72
72
D
34 42Right-handed alpha
Helix 73
73
D
45 50Right-handed alpha
Helix 74
74
D
50 58Right-handed alpha
Helix 75
75
D
62 74Right-handed alpha
Helix 76
76
D
75 76Right-handed 310
Helix 77
77
D
77 81Right-handed 310
Helix 78
78
D
85 88Right-handed 310
Helix 79
79
D
89 97Right-handed alpha
Helix 80
80
D
101 117Right-handed alpha
Helix 81
81
D
120 127Right-handed alpha
Helix 82
82
D
127 137Right-handed alpha
Helix 83
83
D
140 148Right-handed alpha
Helix 84
84
D
149 151Right-handed 310
Helix 85
85
D
159 175Right-handed alpha
Helix 86
86
D
178 187Right-handed alpha
Helix 87
87
D
188 194Right-handed alpha
Helix 88
88
D
197 204Right-handed alpha
Helix 89
89
D
204 213Right-handed alpha
Helix 90
90
D
217 233Right-handed alpha
Helix 91
91
D
239 244Right-handed alpha
Helix 92
92
D
244 252Right-handed alpha
Helix 93
93
D
256 266Right-handed alpha
Helix 94
94
D
266 291Right-handed alpha
Helix 95
95
D
295 304Right-handed alpha
Helix 96
96
D
305 311Right-handed alpha
Helix 97
97
D
314 325Right-handed alpha
Helix 98
98
D
326 331Right-handed alpha
Helix 99
99
D
338 350Right-handed alpha
Helix 100
100
D
352 364Right-handed alpha
Helix 101
101
D
365 374Right-handed alpha
Helix 102
102
D
379 384Right-handed alpha
Helix 103
103
D
388 393Right-handed alpha
Helix 104
104
D
397 402Right-handed alpha
Helix 105
105
D
404 413Right-handed alpha
Helix 106
106
D
416 433Right-handed alpha
Helix 107
107
D
436 441Right-handed alpha
Helix 108
108
D
442 450Right-handed alpha
Helix 109
109
D
451 453Right-handed 310
Helix 110
110
D
455 468Right-handed alpha
Helix 111
111
D
473 481Right-handed alpha
Helix 112
112
D
482 489Right-handed alpha
Helix 113
113
D
494 509Right-handed alpha
Helix 114
114
D
512 521Right-handed alpha
Helix 115
115
D
521 529Right-handed alpha
Helix 116
116
D
533 548Right-handed alpha
Helix 117
117
D
554 559Right-handed alpha
Helix 118
118
D
559 568Right-handed alpha
Helix 119
119
D
572 581Right-handed alpha
Helix 120
120
E
26 29Right-handed 310
Helix 121
121
E
221 225Right-handed 310
Helix 122
122
E
279 285Right-handed alpha
Helix 123
123
E
326 331Right-handed 310
Helix 124
124
E
332 339Right-handed alpha
Helix 125
125
E
340 344Right-handed 310
Helix 126
126
E
409 413Right-handed 310
Helix 127
127
F
7 19Right-handed alpha
Helix 128
128
F
24 41Right-handed alpha
Helix 129
129
F
61 73Right-handed alpha
Helix 130
130
F
92 107Right-handed alpha
Helix 131
131
F
120 127Right-handed alpha
Helix 132
132
F
128 135Right-handed alpha
Helix 133
133
F
140 153Right-handed alpha
Helix 134
134
F
176 183Right-handed alpha
Helix 135
135
F
193 199Right-handed alpha
Helix 136
136
F
221 232Right-handed alpha
Helix 137
137
F
264 268Right-handed 310
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There are 23 sheets in PDB entry 3DW8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
439 443anti-parallel
Strand 3
B
430 434anti-parallel
Strand 4
B
421 424anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
71 78anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
90 92anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
119 132anti-parallel
Strand 4
B
156 172anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
191 195anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
207 216anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
241 246anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
267 269anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 293first strand
Strand 2
B
299 304anti-parallel
Strand 3
B
307 312anti-parallel
Strand 4
B
323 324anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
356 360anti-parallel
Strand 3
B
365 370anti-parallel
Strand 4
B
376 380anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 398first strand
Strand 2
B
408 409parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
218 220parallel
Strand 3
C
209 211anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 18first strand
Strand 2
E
439 443anti-parallel
Strand 3
E
430 434anti-parallel
Strand 4
E
422 424anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 36first strand
Strand 2
E
42 47anti-parallel
Strand 3
E
51 57anti-parallel
Strand 4
E
71 78anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 85first strand
Strand 2
E
90 92anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
98 101first strand
Strand 2
E
109 114anti-parallel
Strand 3
E
119 132anti-parallel
Strand 4
E
156 172anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
182 185first strand
Strand 2
E
191 195anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
207 216anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 234first strand
Strand 2
E
241 246anti-parallel
Strand 3
E
251 255anti-parallel
Strand 4
E
267 269anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
288 293first strand
Strand 2
E
299 304anti-parallel
Strand 3
E
307 312anti-parallel
Strand 4
E
323 324anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
348 350first strand
Strand 2
E
356 360anti-parallel
Strand 3
E
365 370anti-parallel
Strand 4
E
376 380anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 48first strand
Strand 2
F
156 159parallel
Strand 3
F
163 166anti-parallel
Strand 4
F
236 239parallel
Strand 5
F
256 259parallel
Strand 6
F
248 251anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 113first strand
Strand 2
F
80 82parallel
Strand 3
F
52 55parallel
Strand 4
F
273 278anti-parallel
Strand 5
F
284 289anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
202 203first strand
Strand 2
F
218 220parallel
Strand 3
F
210 211anti-parallel
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