Analysis of interatomic Contacts of Structural Units in PDB entry:
3DWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DWA entry

There are 5 chains in PDB entry 3DWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 118
B
 GLU 1ASN 117
C
 GLU 1GLU 120
D
 GLU 1ASN 117
E
 GLU 1LYS 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3DWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 55Right-handed 310
Helix 2
2
A
56 71Right-handed alpha
Helix 3
3
A
85 92Right-handed alpha
Helix 4
4
B
53 55Right-handed 310
Helix 5
5
B
56 71Right-handed alpha
Helix 6
6
B
85 92Right-handed alpha
Helix 7
7
C
53 55Right-handed 310
Helix 8
8
C
56 71Right-handed alpha
Helix 9
9
C
85 92Right-handed alpha
Helix 10
10
D
51 55Right-handed 310
Helix 11
11
D
56 71Right-handed alpha
Helix 12
12
D
85 92Right-handed alpha
Helix 13
13
E
53 55Right-handed 310
Helix 14
14
E
56 71Right-handed alpha
Helix 15
15
E
85 92Right-handed alpha
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There are 3 sheets in PDB entry 3DWA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 24first strand
Strand 2
A
27 35anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
96 102parallel
Strand 5
A
74 79anti-parallel
Strand 6
A
10 24anti-parallel
Strand 7
E
96 102anti-parallel
Strand 8
E
74 79anti-parallel
Strand 9
E
10 24anti-parallel
Strand 10
B
96 102anti-parallel
Strand 11
B
41 47parallel
Strand 12
B
27 35anti-parallel
Strand 13
B
10 24anti-parallel
Strand 14
B
74 79anti-parallel
Strand 15
B
96 102anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 24first strand
Strand 2
E
27 35anti-parallel
Strand 3
E
41 47anti-parallel
Strand 4
E
96 102parallel
Strand 5
E
74 79anti-parallel
Strand 6
E
10 24anti-parallel
Strand 7
B
96 102anti-parallel
Strand 8
B
41 47parallel
Strand 9
B
27 35anti-parallel
Strand 10
B
10 24anti-parallel
Strand 11
D
96 102anti-parallel
Strand 12
D
73 79anti-parallel
Strand 13
D
10 24anti-parallel
Strand 14
C
96 102anti-parallel
Strand 15
C
73 79anti-parallel
Strand 16
C
10 24anti-parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 102first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
10 24anti-parallel
Strand 4
D
96 102anti-parallel
Strand 5
D
41 47parallel
Strand 6
D
27 35anti-parallel
Strand 7
D
10 24anti-parallel
Strand 8
C
96 102anti-parallel
Strand 9
C
41 47parallel
Strand 10
C
27 35anti-parallel
Strand 11
C
10 24anti-parallel
Strand 12
A
96 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il