Analysis of interatomic Contacts of Structural Units in PDB entry:
3DWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DWB entry

There is 1 chain in PDB entry 3DWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 101TRP 770
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3DWB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 115Right-handed alpha
Helix 2
2
A
124 137Right-handed alpha
Helix 3
3
A
148 165Right-handed alpha
Helix 4
4
A
172 187Right-handed alpha
Helix 5
5
A
188 195Right-handed alpha
Helix 6
6
A
196 206Right-handed alpha
Helix 7
7
A
219 230Right-handed alpha
Helix 8
8
A
265 270Right-handed alpha
Helix 9
9
A
276 292Right-handed alpha
Helix 10
10
A
296 318Right-handed alpha
Helix 11
11
A
320 325Right-handed 310
Helix 12
12
A
326 331Right-handed alpha
Helix 13
13
A
336 343Right-handed alpha
Helix 14
14
A
347 356Right-handed alpha
Helix 15
15
A
371 385Right-handed alpha
Helix 16
16
A
386 403Right-handed alpha
Helix 17
17
A
404 406Right-handed 310
Helix 18
18
A
407 419Right-handed alpha
Helix 19
19
A
433 456Right-handed alpha
Helix 20
20
A
457 480Right-handed alpha
Helix 21
21
A
486 500Right-handed alpha
Helix 22
22
A
507 511Right-handed 310
Helix 23
23
A
512 521Right-handed alpha
Helix 24
24
A
529 547Right-handed alpha
Helix 25
25
A
581 583Right-handed 310
Helix 26
26
A
593 600Right-handed alpha
Helix 27
27
A
600 612Right-handed alpha
Helix 28
28
A
616 620Right-handed 310
Helix 29
29
A
631 650Right-handed alpha
Helix 30
30
A
664 690Right-handed alpha
Helix 31
31
A
701 714Right-handed alpha
Helix 32
32
A
719 730Right-handed alpha
Helix 33
33
A
734 745Right-handed alpha
Helix 34
34
A
746 754Right-handed alpha
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There are 3 sheets in PDB entry 3DWB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
716 718anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 244first strand
Strand 2
A
247 256anti-parallel
Strand 3
A
366 369parallel
Strand 4
A
332 335anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 505first strand
Strand 2
A
575 579parallel
Strand 3
A
568 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il