Analysis of interatomic Contacts of Structural Units in PDB entry:
3DWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DWF entry

There are 4 chains in PDB entry 3DWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25TRP 299
B
 GLU 25TRP 299
C
 ASN 24TRP 299
D
 GLU 25TRP 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 3DWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 33Right-handed 310
Helix 2
2
A
44 57Right-handed alpha
Helix 3
3
A
67 82Right-handed alpha
Helix 4
4
A
95 111Right-handed alpha
Helix 5
5
A
132 144Right-handed alpha
Helix 6
6
A
144 162Right-handed alpha
Helix 7
7
A
172 174Right-handed 310
Helix 8
8
A
180 204Right-handed alpha
Helix 9
9
A
220 228Right-handed alpha
Helix 10
10
A
237 251Right-handed alpha
Helix 11
11
A
263 269Right-handed alpha
Helix 12
12
A
270 281Right-handed alpha
Helix 13
13
A
282 284Right-handed 310
Helix 14
14
A
285 291Right-handed alpha
Helix 15
15
B
28 33Right-handed 310
Helix 16
16
B
44 57Right-handed alpha
Helix 17
17
B
67 82Right-handed alpha
Helix 18
18
B
95 111Right-handed alpha
Helix 19
19
B
132 144Right-handed alpha
Helix 20
20
B
144 162Right-handed alpha
Helix 21
21
B
172 174Right-handed 310
Helix 22
22
B
180 204Right-handed alpha
Helix 23
23
B
220 228Right-handed alpha
Helix 24
24
B
237 251Right-handed alpha
Helix 25
25
B
263 269Right-handed alpha
Helix 26
26
B
270 281Right-handed alpha
Helix 27
27
B
282 284Right-handed 310
Helix 28
28
B
285 285Right-handed alpha
Helix 29
29
B
286 287Right-handed alpha
Helix 30
30
B
288 290Right-handed alpha
Helix 31
31
C
28 33Right-handed 310
Helix 32
32
C
44 57Right-handed alpha
Helix 33
33
C
67 82Right-handed alpha
Helix 34
34
C
95 111Right-handed alpha
Helix 35
35
C
132 144Right-handed alpha
Helix 36
36
C
144 162Right-handed alpha
Helix 37
37
C
172 174Right-handed 310
Helix 38
38
C
180 204Right-handed alpha
Helix 39
39
C
220 228Right-handed alpha
Helix 40
40
C
237 251Right-handed alpha
Helix 41
41
C
263 269Right-handed alpha
Helix 42
42
C
270 281Right-handed alpha
Helix 43
43
C
282 284Right-handed 310
Helix 44
44
C
285 290Right-handed alpha
Helix 45
45
D
28 33Right-handed 310
Helix 46
46
D
44 57Right-handed alpha
Helix 47
47
D
67 82Right-handed alpha
Helix 48
48
D
95 111Right-handed alpha
Helix 49
49
D
132 144Right-handed alpha
Helix 50
50
D
144 162Right-handed alpha
Helix 51
51
D
172 174Right-handed 310
Helix 52
52
D
180 204Right-handed alpha
Helix 53
53
D
220 228Right-handed alpha
Helix 54
54
D
237 251Right-handed alpha
Helix 55
55
D
263 269Right-handed alpha
Helix 56
56
D
270 281Right-handed alpha
Helix 57
57
D
282 284Right-handed 310
Helix 58
58
D
285 290Right-handed alpha
Helix 59
59
D
291 296Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3DWF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
60 65parallel
Strand 3
A
36 40parallel
Strand 4
A
115 118parallel
Strand 5
A
164 170parallel
Strand 6
A
209 215parallel
Strand 7
A
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 90first strand
Strand 2
B
60 65parallel
Strand 3
B
36 40parallel
Strand 4
B
115 118parallel
Strand 5
B
164 170parallel
Strand 6
B
209 215parallel
Strand 7
B
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 90first strand
Strand 2
C
60 65parallel
Strand 3
C
36 40parallel
Strand 4
C
115 118parallel
Strand 5
C
164 170parallel
Strand 6
C
209 215parallel
Strand 7
C
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 90first strand
Strand 2
D
60 65parallel
Strand 3
D
36 39parallel
Strand 4
D
115 118parallel
Strand 5
D
164 170parallel
Strand 6
D
209 215parallel
Strand 7
D
255 258parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il