Analysis of interatomic Contacts of Structural Units in PDB entry:
3DWG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DWG entry

There are 3 chains in PDB entry 3DWG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -1ALA 323
B
 ARG -1ALA 323
C
 ASN 2GLY 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3DWG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
51 65Right-handed alpha
Helix 3
3
A
80 94Right-handed alpha
Helix 4
4
A
106 117Right-handed alpha
Helix 5
5
A
128 143Right-handed alpha
Helix 6
6
A
154 164Right-handed alpha
Helix 7
7
A
164 173Right-handed alpha
Helix 8
8
A
186 200Right-handed alpha
Helix 9
9
A
213 218Right-handed 310
Helix 10
10
A
221 225Right-handed 310
Helix 11
11
A
232 236Right-handed 310
Helix 12
12
A
244 259Right-handed alpha
Helix 13
13
A
263 284Right-handed alpha
Helix 14
14
A
296 304Right-handed 310
Helix 15
15
A
309 318Right-handed alpha
Helix 16
16
B
6 11Right-handed 310
Helix 17
17
B
43 45Right-handed 310
Helix 18
18
B
51 65Right-handed alpha
Helix 19
19
B
80 94Right-handed alpha
Helix 20
20
B
106 117Right-handed alpha
Helix 21
21
B
131 143Right-handed alpha
Helix 22
22
B
154 164Right-handed alpha
Helix 23
23
B
164 173Right-handed alpha
Helix 24
24
B
186 200Right-handed alpha
Helix 25
25
B
219 223Right-handed 310
Helix 26
26
B
227 232Right-handed 310
Helix 27
27
B
244 259Right-handed alpha
Helix 28
28
B
263 283Right-handed alpha
Helix 29
29
B
297 301Right-handed 310
Helix 30
30
B
309 319Right-handed alpha
Helix 31
31
C
8 15Right-handed 310
Helix 32
32
C
27 39Right-handed alpha
Helix 33
33
C
41 47Right-handed alpha
Helix 34
34
C
69 71Right-handed 310
Helix 35
35
C
72 76Right-handed 310
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There are 5 sheets in PDB entry 3DWG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
B
16 18parallel
Strand 3
B
35 41anti-parallel
Strand 4
B
287 293parallel
Strand 5
B
178 182parallel
Strand 6
B
204 211parallel
Strand 7
B
238 243parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 243first strand
Strand 2
A
204 211parallel
Strand 3
A
178 182parallel
Strand 4
A
287 293parallel
Strand 5
A
35 41parallel
Strand 6
A
16 18anti-parallel
Strand 7
B
3 4parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
96 102parallel
Strand 3
A
119 123parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
96 102parallel
Strand 3
B
73 76parallel
Strand 4
B
147 148parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 23first strand
Strand 2
C
3 6anti-parallel
Strand 3
C
83 88parallel
Strand 4
C
59 63anti-parallel
Strand 5
C
66 67anti-parallel
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